gnu: r-bigrquery: Update home page.

* gnu/packages/cran.scm (r-bigrquery)[home-page]: Use new Github URL.

Change-Id: I93db880bfc5856aa1ee4506eaddf76a24ddf7ba1

gnu: r-archr: Update to 1.0.2-1.c61b064.

* gnu/packages/bioinformatics.scm (r-archr): Update to 1.0.2-1.c61b064.

Change-Id: I8967cedbfc3390c364f188d50f8ecb2b27cb1417

gnu: Add sugar-chat-activity.

* gnu/packages/sugar.scm (sugar-chat-activity): New variable.

Change-Id: I8c0245d2d31b1c824abeceea71d42b287890199b

gnu: r-workflows: Update to 1.1.4.

* gnu/packages/cran.scm (r-workflows): Update to 1.1.4.

Change-Id: I741eae75801d6606bd179be59144e12e236193bc

gnu: r-setrng: Update to 2024.2-1.

* gnu/packages/cran.scm (r-setrng): Update to 2024.2-1.

Change-Id: I7a39f744175b470c3fff6a6add30ddbec4c88dcf

gnu: r-performance: Update to 0.10.9.

* gnu/packages/cran.scm (r-performance): Update to 0.10.9.

Change-Id: I6a7225e5465f03404db35da744c2478b6b9224e6

gnu: r-magick: Update to 2.8.3.

* gnu/packages/cran.scm (r-magick): Update to 2.8.3.

Change-Id: Iec4535cc1baf5767ebff6ffc9d18d67b4e305e30

gnu: r-splus2r: Update to 1.3-5.

* gnu/packages/cran.scm (r-splus2r): Update to 1.3-5.

Change-Id: Iac0be3d6d4d2a9a58281ba4c4c75a0c6bb86e057

gnu: r-sm: Update to 2.2-6.0.

* gnu/packages/cran.scm (r-sm): Update to 2.2-6.0.

Change-Id: I3e18ccda83177722e4dbdda1c5e7ccfdd1d6387d

gnu: r-recipes: Update to 1.0.10.

* gnu/packages/cran.scm (r-recipes): Update to 1.0.10.

Change-Id: Ie28be7c24181407f20f55b9cb469b0870e232c61

gnu: r-collapse: Update to 2.0.10.

* gnu/packages/cran.scm (r-collapse): Update to 2.0.10.

Change-Id: I1471c026e8063529aa1120564d17777ea1f4acfb

gnu: r-igraph: Update to 2.0.2.

* gnu/packages/cran.scm (r-igraph): Update to 2.0.2.
[propagated-inputs]: Add r-vctrs.

Change-Id: I9e62b47065c7e7cf7f1d6f78550caca0df54e550

gnu: r-callr: Update to 3.7.4.

* gnu/packages/cran.scm (r-callr): Update to 3.7.4.

Change-Id: I90e0fc91fdad8a2ce7a368d076a54d74ec3497c0

gnu: r-r-rsp: Update to 0.46.0.

* gnu/packages/statistics.scm (r-r-rsp): Update to 0.46.0.

Change-Id: I9512cbf807d0c7346e17ac35c43a1d9f83b4faa9

gnu: r-pscbs: Update to 0.67.0.

* gnu/packages/bioconductor.scm (r-pscbs): Update to 0.67.0.

Change-Id: Ib60a434d40ede5f0c24590c65c45fb7e99affb2a

upstream: update-package-inputs: Sort extra inputs.

Ensure that extra inputs end up in the correct order.

* guix/upstream.scm (update-package-inputs)[filtered-inputs]: Sort new list of
inputs.

Change-Id: Ia5fddd8103a33c79426995057fcce61c2e9e5a72

machine/ssh: Refresh parameterization of %CURRENT-SYSTEM.

When using "guix deploy" on an x86_64-linux machine to deploy a system to
i686-linux, DEPLOY-MANAGED-HOST would revert %CURRENT-SYSTEM to the host
system's value by the time it evaluated UPGRADE-SHEPHERD-SERVICES.  The
earlier PARAMETERIZE would no longer be effective.

* gnu/machine/ssh.scm (deploy-managed-host): Ensure that
UPGRADE-SHEPHERD-SERVICES is evaluated for the architecture of the target
machine.

Change-Id: I0816da79cd7c46a69418717fa33b2fe4e2fabae0

gnu: Add r-abbreviate.

* gnu/packages/cran.scm (r-abbreviate): New variable.

Change-Id: I8632c1e7b2b5f5b03140191f6fea558d540ae496
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>

gnu: python-ega-download-client: Add missing input.

* gnu/packages/bioinformatics.scm (python-ega-download-client)
[native-inputs]: Add python-mock.

Change-Id: I3befca6de33f959f4d916caa839d7201c77e8209
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>

gnu: bemenu: Install man pages

Since version 0.6.5 man pages are written in scdoc, therefore we
need to update the dependencies accordingly to ensure that the
man pages are build and installed:

* gnu/packages/xdisorg.scm (bemenu): Add dependency on scdoc.

Signed-off-by: Sören Tempel <soeren@soeren-tempel.net>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>