gnu: debops: Update to 3.2.2.

* gnu/packages/patches/debops-constants-for-external-program-names.patch
and gnu/packages/patches/debops-debops-defaults-fall-back-to-less.patch:
Remove patches.
* gnu/packages/patches/debops-setup-py-avoid-git.patch: Add patch.
* gnu/local.mk: Adjust patches.
* gnu/packages/admin.scm (debops): Update to 3.2.2.
[source]<patches>: Adjust patches.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Remove git.
[inputs]: Add git, git-crypt.
[propagated-inputs]: Reorder. Add python-dotenv, python-future,
python-gitpython, python-jinja2, python-pyyaml, python-pyxdg,
python-toml.
[arguments]<#:tests?>: Unset (although no tests in source).
<#:phases>: Remove all existing modifications. Add 'wrap-script phase.
<#:modules>: Add for <#phases>.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: podman-compose: Update to 1.2.0.

* gnu/packages/containers.scm (podman-compose): Update to 1.2.0.
[native-inputs]: Add python-parameterized.

Change-Id: I7303d127de02bd8a7d463ee5ba5c08563093e44f
Reviewed-by: Tomas Volf <~@wolfsden.cz>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: cuirass: Update to e96f088.

* gnu/packages/ci.scm (cuirass): Update to e96f088.

Change-Id: I04a37825be998edfea0d9313c97baa395a11418b

gnu: erlang: Update to 27.1.2.

* gnu/packages/erlang.scm (erlang): Update to 27.1.2.

Change-Id: I3e0e3a525b9451a406413b06eea4d5a085c66f64
Signed-off-by: Andrew Tropin <andrew@trop.in>

gnu: trealla: Update to 2.56.14.

* gnu/packages/prolog.scm (trealla): Update to 2.56.14.

Change-Id: I8c3ccb53eddf7e3156fcbab5772d024bd3fc46d7

gnu: yggdrasil: Update to 0.5.9.

* gnu/packages/networking.scm (yggdrasil): Update to 0.5.9.
[propagated-inputs]: Remove go-nhooyr-io-websocket; add go-github-com-coder-websocket and
go-github-com-wlynxg-anet.

Change-Id: I282661d8e45c9a02ec9d4e8a9079a469d19261a1

gnu: go-github-com-arceliar-ironwood: Update to v0.0.0-20241016082300-f6fb9da97a17.

* gnu/packages/golang.scm (go-github-com-arceliar-ironwood): Update to v0.0.0-20241016082300-f6fb9da97a17.

Change-Id: Ic1007a777545169f024bebe0cd50ac48e25bb2e6

gnu: go-github-com-wlynxg-anet: Update to 0.0.5.

* gnu/packages/golang-web.scm (go-github-com-wlynxg-anet): Update to 0.0.5.

Change-Id: I4ff2de41e7011b16226079a4d4a8a1387a61e165

gnu: Add go-github-com-coder-websocket.

* gnu/packages/golang-web.scm (go-github-com-coder-websocket): New variable.

Change-Id: Ia3533f889aacb478b29d8c5ec4cd86a23ba411cc

gnu: wfmash: Update to 0.21.0.

* gnu/packages/bioinformatics.scm (wfmash): Update to 0.21.0.
[source]: Use url-fetch.
[arguments]: Do not replace standard check phase. Add fix-cmakelists and
build-check-prerequisites phases.
[inputs]: Remove jemalloc. Add libdeflate.

Change-Id: I664178e9fac7320b9d6e3190e8a3779b2bce2c6b

gnu: totem: Generate man pages.

* gnu/packages/gnome.scm (totem) [native-inputs]: Add perl.

Change-Id: I8ea9a92c6cc94fbb8d6dafa8ea1b8337ed928468

gnu: totem: Add gst-libav plugin.

This helps with the generation of thumbnails, avoiding errors such as:

   totem-video-thumbnailer couldn't open file
   'file:///tmp/gnome-desktop-file-to-thumbnail.mkv'

* gnu/packages/gnome.scm (totem) [inputs]: Add gst-libav.

Change-Id: I6947095561f4f1dd83a45d1a47ddb837f5990456

gnu: totem: Sort native inputs.

* gnu/packages/gnome.scm (totem) [native-inputs]: Sort.

Change-Id: I42d46d40fb36903318c375e12d798280a9fde5b7

gnu: totem: Add libportal to inputs.

* gnu/packages/gnome.scm (totem) [inputs]: Add libportal.

Change-Id: I80af0a60782bb1dab24fdd698acb9bc28ae4318b

Revert "gnu: totem: Match the features of the upstream flatpak distribution."

This reverts commit 0e94db8a276692a819933f63fb3f654b045c57fe.  This commit was
misguided: most of the dependencies found in the upstream flatpak definition
are transitive dependencies (most of them used by grilo/grilo-plugins here).

Change-Id: I7136743eda5d0d0b7a7e8420c3b44624ac46ba06

gnu: joycond: Update to 0.1.0-2.5b590ec.

* gnu/packages/games.scm (joycond): Update to 0.1.0-2.5b590ec.

Change-Id: I86a258b6d2992e6b72b4bc4b33b4fdfb2c94e296

Revert "gnu: joycond: Update to 0.1.0-2.9d1f509."

Attempt to resolve a new 100% CPU spike problem.

This partially reverts commit ecda7d3ef7c1b31d34a4353a2fd637b9d48d75a4.

Change-Id: I9f5e05ae926e49367b2a57dad8f5188ddf0ad604

gnu: python-sqlalchemy-2: Improve package style.

Add missing input as seen python-team build
<https://ci.guix.gnu.org/build/6245544/log/raw>.

* gnu/packages/databases.scm (python-sqlalchemy-2): Improve packge
style. Shift order of the fields.
[arguments]<#:phases>: Remove all custom phases, swap tests deletion
and substitution with "--ignore" and "-k" options in <#:test-flags>.
[propagated-inputs]: Add python-greenlet.
[native-inputs]: Add python-cython and python-setuptools.
[description]: Fix indentation.

Change-Id: Ib1f145efe8d9b24aa069a4c616525855b278568b

gnu: python-sqlalchemy-2: Update to 2.0.36.

* gnu/packages/databases.scm (python-sqlalchemy-2): Update to 2.0.36.

Change-Id: If290390a508f62a71770387a575efe379f171ff6

gnu: totem: Update to 43.0-0.50cbd3f.

* gnu/packages/gnome.scm (totem): Update to 43.0-0.50cbd3f.
[source]: Switch to git.

Change-Id: I5e503b5d3164e6615b7c539484235f5fa8b41863