gnu: python-dpath: Update to 2.2.0.

* gnu/packages/python-xyz.scm (python-dpath): Update to 2.2.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[native-inputs]: Remove python-mock and python-nose; add python-nose2,
python-setuptools, and python-wheel.

Change-Id: I30ca919712b03f868d3e9fed4802817e4602dcda

gnu: snakemake-7: Update to 7.32.4.

* gnu/packages/python-xyz.scm (snakemake-7): Update to 7.32.4.
[arguments]: Use #:test-flags instead of a custom 'check phase; remove
'tabulate-compatibility phase; add 'pre-check phase.
[propagated-inputs]: Add python-humanfriendly, python-reretry, and
python-throttler; remove python-ratelimiter.

Change-Id: Iea7f17559b19098ca5a589d164355f3918f4bb3e

gnu: python-toposort: Update to 1.10.

* gnu/packages/python-xyz.scm (python-toposort): Update to 1.10.
[build-system]: Use pyproject-build-system.
[arguments]: Replace 'check phase.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ifde522ecba6331634c911856892c3b25098fbd88

gnu: Add python-reretry.

* gnu/packages/python-xyz.scm (python-reretry): New variable.

Change-Id: Ic54bdb5eee422b12d2c0e475abb6c4f142cad1e3

gnu: Add python-throttler.

* gnu/packages/python-xyz.scm (python-throttler): New variable.

Change-Id: I04a07281d4ba77d880d7c8176b1a3269713b9b63

gnu: python-cftime: Fix tests.

* gnu/packages/python-xyz.scm (python-cftime) [arguments] <phases>:
Remove 'remove-unwanted-dev-dependencies, add ''remove-unwanted-pytest-options.
[native-inputs]: Remove python-sphinx.

Change-Id: Ib196a6a3781da4067d287f62f5f92b72eb024de3

gnu: Remove python-pep8.

* gnu/packages/python-xyz.scm (python-pep8): Delete variable.
(python-cliapp, python-ttystatus)[native-inputs]: Remove python-pep8.
* gnu/packages/radio.scm (chirp)[native-inputs]: Remove python-pep8.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-anndata: Ignore failing test.

* gnu/packages/python-xyz.scm (python-anndata)[arguments]{test-flags}:
Ignore test_read_write_X test.

gnu: Remove python-dictpath.

* gnu/packages/python-xyz.scm (python-dictpath): Remove variable.
* gnu/packages/python-web.scm (python-openapi-core)[propagated-inputs]:
Remove unecessary python-dictpath.

gnu: Remove python-rednose.

This package is broken with the latest python version, and is easy to
remove.

* gnu/packages/check.scm (python-rednose): Delete variable.
* gnu/packages/python-xyz.scm (python-sure) and
* gnu/packages/web.scm (python-httpretty):
[arguments]: Add 'remove-rednose-dependency in {phases}.
[native-inputs]: Remove python-rednose.

gnu: python-peachpy: Update to 0.2.0-3.349e8f8.

* gnu/packages/python-xyz.scm (python-peachpy): Update to
0.2.0-3.349e8f8.
[build-system]: Switch to pyproject-build-system.
[arguments]: Remove {phases}. Add {test-target} to ignore a failing
test.
[native-inputs]: Remove python-nose, python-rednose. Add
python-pytest, python-wheel.

gnu: python-pykdtree: Update to 1.3.9.

* gnu/packages/python-xyz.scm (python-pykdtree): Update to 1.3.9.
[native-inputs]: Remove python-nose. Add python-cython, python-pytest,
python-setuptools, python-wheel.

gnu: python-multiprocessing-on-dill: Use pyproject-build-system.

* gnu/packages/python-xyz.scm (python-multiprocessing-on-dill): Use pyproject-build-system.
[arguments]: Remove field.
[native-inputs]: Remove uneeded python-check-manifest. Add python-pytest.

gnu: python-cftime: Update to 1.6.4.

* gnu/packages/python-xyz.scm (python-cftime): Update to 1.6.4.
[arguments]{phases}: Add phase 'remove-unwanted-dev-dependencies.
[native-inputs]: Remove python-check-manifest, python-pytest-cov. Add
python-setuptools.

gnu: python-pillow-heif: Update test-flags.

* gnu/packages/python-xyz.scm (python-pillow-heif)[arguments]{test-flags}:
Update them.
[native-inputs]: Remove uneeded python-pylint.

gnu: python-watchgod: Rename package to python-watchfiles.

* gnu/packages/python-xyz.scm (python-watchgod): Define in terms of
'deprecated-package'.
[version]: Update to 1.0.4.
[build-system]: Switch to cargo-build-system.
[arguments]: Likewise.
[native-inputs]: Add maturin, python-dirty-equals,
python-pytest-timeout, python-wrapper. Remove python-pygments,
python-pytest-sygar, python-setuptools and python-wheel.
(python-watchfiles): New variable, formerly known as
"python-watchgod".

gnu: python-shortuuid: Update to 1.0.13.

* gnu/packages/python-xyz.scm (python-shortuuid): Update to 1.0.13.
[native-inputs]: Remove python-pep8; add python-poetry-core and python-pytest.
[build-system]: Use pyproject-build-system.

Change-Id: If854af9296fa378c505e83d87bacf609978edf9f

gnu: python-multiprocess: Update to 0.70.17.

* gnu/packages/python-xyz.scm (python-multiprocess): Update to 0.70.17.
[arguments]{phases}: Use gexps. Remove phase
'disable-broken-tests. Improve phase 'check.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-dill: Update to 0.3.9.

* gnu/packages/python-xyz.scm (python-dill): Update to 0.3.9.
[arguments]{phases}: Rewrite using gexp. Adapt 'check phase.
[native-inputs]: Remove python-nose.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Remove python-flake8-pie.

* gnu/packages/python-xyz.scm (python-flake8-pie): Delete variable.

Change-Id: I094d1b46090473f4cdb19bf40088d717c574f778