gnu: nyacc: Install all modules.

* gnu/packages/mes.scm (nyacc)[arguments]: Add build phase
'install-system-module.
[propagated-inputs]: Add guile-bytestructures.

services: zabbix-server: Do not write database password to the store.

* gnu/services/monitoring.scm (zabbix-front-end-config): Read the secret file
from zabbix.conf.php at runtime instead of embedding the contents.

gnu: zabbix-server: Remove duplicate input.

* gnu/packages/monitoring.scm (zabbix-server)[inputs]: Remove CURL.

gnu: zabbix-server: Don't install agent.

* gnu/packages/monitoring.scm (zabbix-server)[arguments]: Delete
"--enable-agent" from #:configure-flags.

gnu: zabbix-server: Adjust style.

* gnu/packages/monitoring.scm (zabbix-server)[arguments]: Rewrite as gexp,
use #:phases matching, and remove trailing #t's.

services: zabbix-agent: Respect user and group configuration.

* gnu/services/monitoring.scm (zabbix-agent-account): Look up user and group
from CONFIG instead of hard-coded values.

gnu: nyacc: Fix bug 60474.

* gnu/packages/mes.scm (nyacc)[arguments]: Add build phase 'fix-60474.

gnu: nyacc: Update to 1.06.5.

* gnu/packages/mes.scm (nyacc): Update to 1.06.5.
[source]: Simplify snippet.

gnu: Add python-regions.

* gnu/packages/astronomy.scm (python-regions): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add python-photutils.

* gnu/packages/astronomy.scm (python-photutils): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add python-astropy-healpix.

* gnu/packages/astronomy.scm (python-astropy-healpix): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add python-astroquery.

* gnu/packages/astronomy.scm (python-astroquery): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add python-pyvo.

* gnu/packages/astronomy.scm (python-pyvo): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add emacs-puni.

* gnu/packages/emacs-xyz.scm (emacs-puni): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: QGIS: Build without QtWebKit.

See <https://issues.guix.gnu.org/53289> and <https://issues.guix.gnu.org/53512>
for more information about this change.

* gnu/packages/geo.scm (qgis)[inputs]: Remove qtwebkit.
[arguments]: Pass "-DWITH_QTWEBKIT=NO" to #:configure-flags. Make the
custom 'check' phase honor TESTS?. Skip even more failing tests.

gnu: FreeCAD: Replace QtWebKit with QtWebEngine.

See <https://issues.guix.gnu.org/53289> for more information about this change.

* gnu/packages/engineering.scm (freecad)[inputs]: Remove QTWEBKIT. Add
QTDECLARATIVE, QTWEBCHANNEL, and QTWEBENGINE.

Add copyright notice for 'Bird'.

This is a followup to commit cc74d19d663b78a9ec8207d7e3a41cabfbe1a100.

* gnu/packages/video.scm: Add copyright attribution.

gnu: Add gallery-dl.

* gnu/packages/video.scm (gallery-dl): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: Add python-esprima.

* gnu/packages/python-xyz.scm (python-esprima): New variable.

gnu: python-uvloop: Update to 0.16.0.

Version 0.14.0 is not compatible with Python 3.9[1]. Additionally unvendor the
copy of libuv, which was unused, but retained in the source tarball,
fix subprocess spawning and enable tests, so we know when future updates
break it.

[1] https://github.com/MagicStack/uvloop/issues/349

* gnu/packages/python-web.scm (python-uvloop): Update to 0.16.0.
[source]: Add snippet to remove pre-built loop.c and vendored libuv.
[arguments]<#:phases>: Substitute /bin/sh in 'preparations phase, override
'check phase and disable failing tests.
[native-inputs]: Remove python-flake8, because it causes test failures
and add python-pytest-timeout.