gnu: python-pyquery: Update to 2.0.1.

* gnu/packages/python-xyz.scm (python-pyquery): Update to 2.0.1.
[build-system]: Switch to pyproject-build-system.
[arguments]{test-flags}: Ignore a test that requires network access.
[native-inputs]: Add python-pytest, python-pytest-cov,
python-requests, python-setuptools, python-webob, python-webtest,
python-wheel.
[propagated-inputs]: Sort inputs.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Remove python-anyjson.

This package is a leaf package in Guix, is stale for 13 years, and its
upstream repository is not even up anymore.

* gnu/packages/python-xyz.scm (python-anyjson): Delete variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-jsonargparse: Update to 4.37.0.

* gnu/packages/python-xyz.scm (python-jsonargparse): Update to 4.37.0.
[arguments]{test-flags}: Remove uneeded test-flags.
[propagated-inputs]: Remove python-contextvars,
python-docstring-parser, python-pyyaml, python-typeshed-client.
[native-inputs]: Add python-pypa-build. Remove python-coverage,
python-pycodestyle, python-tox, python-types-requests.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-zeroc-ice: Update to 3.7.10.1.

* gnu/packages/python-xyz.scm (python-zeroc-ice): Update to 3.7.10.1.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-netaddr: Move to (gnu packages python-web).

* gnu/packages/python-xyz.scm (python-netaddr): Move from here…
* gnu/packages/python-web.scm (python-netaddr): …to here.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-colored-traceback.

* gnu/packages/python-xyz.scm (python-colored-traceback): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-ncls: Update to 0.0.68.

* gnu/packages/python-xyz.scm (python-ncls): Update to 0.0.68.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-cython, python-pandas, python-pytest,
python-setuptools, python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-cesium: Move to (gnu packages astronomy).

The dependencies of this package are already in (gnu packages astronomy).

* gnu/packages/python-xyz.scm (python-cesium): Move from here…
* gnu/packages/astronomy.scm (python-cesium): …to here.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Remove python-asynctest.

No updates since 2019, fails to build and has no users in Guix.  See
<https://github.com/Martiusweb/asynctest/issues/163> there is a standard
'unittest.IsolatedAsyncioTestCase' drop-in replacement.

* gnu/packages/python-xyz.scm (python-asynctest): Delete variable.

Change-Id: If63cfd698a74f86c6895db04e0d7cd02728ae757

gnu: python-asn1tools: Update to 0.167.0 and fix build.

* gnu/packages/python-xyz.scm (python-asn1tools): Update to 0.167.0, fix
build.
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Skip 7 failing tests.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: I36d12d9bfe2fd6d62a75dd0d30de42a782c4a746

gnu: nikola: Skip one test.

* gnu/packages/python-xyz.scm (nikola) [arguments] <test-flags>: Skip
one test.

Change-Id: I10d4edf07b7c7b4e19020773215da5eae27cd0f4

gnu: Add python-pyemd.

* gnu/packages/python-xyz.scm (python-pyemd): New variable.

Change-Id: Ibdbbebd22616aa1a83ad721d3a96caa75ab7e1b1

gnu: python-jsondiff: Update to 2.2.1.

* gnu/packages/python-xyz.scm (python-jsondiff): Update to 2.2.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase 'set-version.
[propagated-inputs]: Add python-pyyaml.
[native-inputs]: Add python-hypothesis, python-pytest, python-setuptools,
python-setuptools-scm, and python-wheel; remove python-nose and
python-nose-random.

Change-Id: Ib3756e561e6f53353c950e472c8cf5275e055005

gnu: python-strict-rfc3339: Disable more tests on 32-bit platforms.

* gnu/packages/python-xyz.scm (python-strict-rfc3339)[arguments]:
Conditionally ignore the TestTimestampToRFC3339UTCOffset tests on 32-bit
platforms due to the size of the time_t type.

Change-Id: I2c9844c6a022946d9ec917bb3a6b06777b0fc260

gnu: python-numpy: Disable test on 32 bit systems.

* gnu/packages/python-xyz.scm (python-numpy)[arguments]: Conditionally disable
failing test_int test.

Change-Id: I12b25b4019ff8a06b311decdcd2eafe68854b241

gnu: Remove python-anyio/without-dataclasses.

* gnu/packages/python-xyz.scm (python-anyio/without-dataclasses): Remove
variable.
* gnu/packages/jupyter.scm (python-jupyter-server)[propagated-inputs]: Replace
python-anyio/without-dataclasses with python-anyio.

Change-Id: I81433128fc3ed2f098bd84f1f89555e9dda62d6d

gnu: python-dask-image: Update to 2024.5.3.

* gnu/packages/python-xyz.scm (python-dask-image): Update to 2024.5.3.
[arguments]: Add phase 'set-version.
[native-inputs]: Add python-coverage, python-flake8, python-pytest-cov,
python-pytest-timeout, python-setuptools, python-setuptools-scm, python-twine,
and python-wheel.

Change-Id: I2297cb6942f7c97a330847bda8e0c33c84266322

gnu: python-duckdb: Disable one more test.

* gnu/packages/python-xyz.scm (python-duckdb)[arguments]: Disable wrap
coverage test.

Change-Id: I625bc37c979d7c0fa3a2e67d35267993ae791b9e

gnu: python-ratelimiter: Update to 1.2.0.post1.

* gnu/packages/python-xyz.scm (python-ratelimiter): Update to 1.2.0.post1.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase 'pytest-compatibility.
[native-inputs]: Add python-pytest, python-pytest-asyncio, python-setuptools,
and python-wheel.

Change-Id: I9f7665feb4cf31e38185be7e0cd5ffe7691e26f7

gnu: snakemake-6: Disable one more test.

* gnu/packages/python-xyz.scm (snakemake)[arguments]: Disable test_lint test;
replace custom 'check phase with 'pre-check phase.

Change-Id: I9631383ab6160ee8a234145515bbf198b54b1e57