gnu: Deprecate python-pep621.

* gnu/packages/python-xyz.scm (python-pep621): Define as deprecated alias for
PYTHON-PYPROJECT-METADATA.

gnu: Add python-pyproject-metadata.

* gnu/packages/python-xyz.scm (python-pyproject-metadata): New variable.
(python-pep621): Inherit from it.

gnu: python-gast: Enable tests.

* gnu/packages/python-xyz.scm (python-gast)[arguments]: Override check phase.
[native-inputs]: Add PYTHON-PYTEST.

gnu: python-gast: Update to 0.5.3.

* gnu/packages/python-xyz.scm (python-gast): Update to 0.5.3.

gnu: python-astunparse: Update to 1.6.3.

* gnu/packages/python-xyz.scm (python-astunparse): Update to 1.6.3.

gnu: python-gast: Update home page.

* gnu/packages/python-xyz.scm (python-gast)[home-page]: Use actual instead of
PyPI page.

gnu: python-docutils: Add 0.19.

* gnu/packages/python-xyz.scm (python-docutils-0.19): New variable.

gnu: python-qrcode: Update to 7.3.1.

* gnu/packages/python-xyz.scm (python-qrcode): Update to 7.3.1.
[propagated-inputs]: Remove python-six.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>

gnu: python-pip: Update to 22.2.2.

* gnu/packages/python-xyz.scm (python-pip): Update to 22.2.2.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: Add comments to the bottom of a few package modules.

This will hopefully discourage patches which add new packages to the bottom of
files, as this increases the likelihood of conflicts when applying patches.

If there are more specific ways that packages should be arranged in specific
modules, this message can be updated accordingly.

* gnu/packages/bioconductor.scm: Add comment discouraging adding packages to
the bottom of the file.
* gnu/packages/bioinformatics.scm: ditto.
* gnu/packages/cran.scm: ditto.
* gnu/packages/crates-io.scm: ditto.
* gnu/packages/emacs-xyz.scm: ditto.
* gnu/packages/golang.scm: ditto.
* gnu/packages/guile-xyz.scm: ditto.
* gnu/packages/haskell-xyz.scm: ditto.
* gnu/packages/java.scm: ditto.
* gnu/packages/julia-xyz.scm: ditto.
* gnu/packages/lisp-xyz.scm: ditto.
* gnu/packages/ocaml.scm: ditto.
* gnu/packages/perl.scm: ditto.
* gnu/packages/python-science.scm: ditto.
* gnu/packages/python-xyz.scm: ditto.
* gnu/packages/ruby.scm: ditto.
* gnu/packages/tex.scm: ditto.

gnu: python-psutil: Update to 5.9.2.

* gnu/packages/python-xyz.scm (python-psutil): Update to 5.9.2.

gnu: python-pathlib2: Update to 2.3.7.post1.

* gnu/packages/python-xyz.scm (python-pathlib2): Update to 2.3.7post1.

gnu: python-beautifulsoup4: Update to 4.11.1.

* gnu/packages/python-xyz.scm (python-beautifulsoup4): Update to 4.11.1.
[arguments]: Override check phase.
[native-inputs]: Add PYTHON-PYTEST.

gnu: Add python-pymonad.

* gnu/packages/python-xyz.scm (python-pymonad): New variable.

gnu: python-sympy: Update to 1.11.1.

All dependents successfully build except the continued failure of
python-dolfin-adjoint: http://ci.guix.gnu.org/build/1306546/details

* gnu/packages/python-xyz.scm (python-sympy): Update to 1.11.1.

Signed-off-by: Marius Bakke <marius@gnu.org>

gnu: python-cfgv: Update to 3.3.1.

* gnu/packages/python-xyz.scm (python-cfgv): Update to 3.3.1.
[arguments]: Respect TESTS? keyword in check phase.
[native-inputs]: Remove PYTHON-COVERAGE and PYTHON-COVDEFAULTS.

gnu: python-fs: Update to 2.4.16.

* gnu/packages/python-xyz.scm (python-fs): Update to 2.4.16.

gnu: python-cairocffi: Update to 1.3.0.

* gnu/packages/python-xyz.scm (python-cairocffi): Update to 1.3.0.

gnu: python-xlsxwriter: Update to 3.0.3.

* gnu/packages/python-xyz.scm (python-xlsxwriter): Update to 3.0.3.

gnu: python-jdcal: Update to 1.4.1.

* gnu/packages/python-xyz.scm (python-jdcal): Update to 1.4.1.
[arguments]: Use G-expression and respect TESTS? keyword.