gnu: python-netaddr: Update to 1.3.0.

* gnu/packages/python-web.scm (python-netaddr): Update to 1.3.0.
[build-system]: Switch to pyproject.
[native-inputs]: Add python-poetry-core, python-pytest,
python-setuptools, python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-netaddr: Move to (gnu packages python-web).

* gnu/packages/python-xyz.scm (python-netaddr): Move from here…
* gnu/packages/python-web.scm (python-netaddr): …to here.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Standardize python-oslo.* package names.

* gnu/packages/openstack.scm (python-oslo.concurrency,
python-oslo.config, python-oslo.context, python-oslo.i18n,
python-oslo.log, python-oslo.serialization, python-oslo.utils): Rename
packages.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-debtcollector: Update to 3.0.0.

* gnu/packages/openstack.scm (python-debtcollector): Update to 3.0.0.
[source]: Patch {origin} to remove unwanted native-inputs.
[build-system]: Switch to pyproject-build-system.
[propagated-inputs]: Remove python-six.
[native-inputs]: Add python-doc8, python-fixtures,
python-openstackdocstheme, python-reno, python-setuptools,
python-stestr and python-wheel. Remove python-subunit and
python-testrepository.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: pwntools: Update to 4.4.0.

* gnu/packages/cybersecurity.scm (pwntools): Update to 4.4.0.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-unix-ar.

* gnu/packages/python-compression.scm (python-unix-ar): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-colored-traceback.

* gnu/packages/python-xyz.scm (python-colored-traceback): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pegasusio: Update to 0.9.1.

* gnu/packages/bioinformatics.scm (python-pegasusio): Update to 0.9.1.
[propagated-inputs]: Add python-cython, python-setuptools. Remove
python-importlib-metadata.
[native-inputs]: Styling from guix style.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-nptyping: Ignore failing test.

* gnu/packages/python-check.scm (python-nptyping)[arguments]
{test-flags}: Ignore failing test.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-ncls: Update to 0.0.68.

* gnu/packages/python-xyz.scm (python-ncls): Update to 0.0.68.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-cython, python-pandas, python-pytest,
python-setuptools, python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-cell2cell: Update to 0.7.4.

* gnu/packages/bioinformatics.scm (python-cell2cell): Update to 0.7.4.
[source]{origin}: Relax requirements in snippet.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: crossmap: Add missing python-pyparsing native-input.

* gnu/packages/bioinformatics.scm (python-pyparsing)[native-inputs]:
Add python-pyparsing.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-bx-python: Update to 0.13.0.

* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.13.0.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-cesium: Move to (gnu packages astronomy).

The dependencies of this package are already in (gnu packages astronomy).

* gnu/packages/python-xyz.scm (python-cesium): Move from here…
* gnu/packages/astronomy.scm (python-cesium): …to here.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-cleanlab: Update to 2.7.1.

* gnu/packages/machine-learning.scm (python-cleanlab): Update to 2.7.1.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: pairadise: Add missing native-inputs.

* gnu/packages/bioinformatics.scm (pairadise)[native-inputs]: Add
python-setuptools and python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-biom-format: Update to 2.1.16.

* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.16.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Remove python-asynctest.

No updates since 2019, fails to build and has no users in Guix.  See
<https://github.com/Martiusweb/asynctest/issues/163> there is a standard
'unittest.IsolatedAsyncioTestCase' drop-in replacement.

* gnu/packages/python-xyz.scm (python-asynctest): Delete variable.

Change-Id: If63cfd698a74f86c6895db04e0d7cd02728ae757

gnu: python-asyncua: Fix build.

python-asynctest has not been updated for 6y and fails to build, but
it's optional in tests. This change removes it from native inputs.

* gnu/packages/engineering.scm (python-asyncua): Update to 1.1.5.
[source]: Mention about the third party submodule on recursive option.
[native-inputs]: Remove python-asynctest and python-pytest-runner; add
python-pytest.

Change-Id: I9d268c43ebe97fcaacc5125e1038f6ff371d39b2

gnu: python-asn1tools: Update to 0.167.0 and fix build.

* gnu/packages/python-xyz.scm (python-asn1tools): Update to 0.167.0, fix
build.
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Skip 7 failing tests.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: I36d12d9bfe2fd6d62a75dd0d30de42a782c4a746