linux-initrd: Adjust VM code and doc to new 'base-initrd' signature.

This fixes regressions introduced in de1c158 ("system: Add support for
boot-time mapped devices.").

* doc/guix.texi (Initial RAM Disk): Adjust example with custom use of
  'base-initrd'.  Document #:mapped-devices parameter of 'base-initrd'.
* gnu/system/vm.scm (system-disk-image, system-qemu-image,
  virtualized-operating-system): Adjust call to 'base-initrd' to new
  signature.

linux-initrd: Remove now obsolete #:guile-modules-in-chroot? parameter.

* gnu/build/linux-boot.scm (boot-system): Remove
  #:guile-modules-in-chroot? and related code.
* gnu/system/linux-initrd.scm (base-initrd): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Remove
  #:guile-modules-in-chroot? argument in 'base-initrd' call.

Merge branch 'master' into core-updates

Conflicts:
	gnu/packages/image.scm

linux-initrd: Copy all the script's closure to the initrd.

* gnu/system/linux-initrd.scm (expression->initrd): Remove calls to
  'imported-modules' and 'compiled-modules'.  Use 'gexp->script' with
  EXP.  Add the result to TO-COPY.  Make /init a symlink to that script,
  and copy its closure into the "contents" directory.  Add fake
  /proc/self/exe symlink.
* gnu/build/linux-boot.scm (load-linux-module*): Add comment about mmap.
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Add "-m
  256".  This turns out to be needed for initrds containing things like
  e2fsck and several modules; with the default of 128 MiB, loading
  libahci.ko may fail with -1.

Merge branch 'master' into core-updates

gexp: Allow use of high-level objects in #:references-graphs.

* guix/gexp.scm (lower-reference-graphs): New procedure.
  (gexp->derivation)[graphs-file-names]: New procedure.
  Use 'lower-reference-graphs', and augment #:inputs argument as a
  function of #:references-graphs.
* doc/guix.texi (G-Expressions): Adjust 'gexp->derivation' documentation
  accordingly.
* tests/gexp.scm ("gexp->derivation, store copy"): Remove reference to
  TWO in BUILD-DRV.  Use TWO directly in #:references-graphs argument.
  ("gexp->derivation #:references-graphs"): New test.
* gnu/system/vm.scm (qemu-image): Remove variable 'graph'; use INPUTS as
  the #:references-graphs argument to
  'expression->derivation-in-linux-vm'.

vm: Move store copy handling to (guix build store-copy).

* gnu/build/vm.scm (read-reference-graph, populate-store): Move to...
* guix/build/store-copy.scm: ... here.  New file.
* Makefile.am (MODULES): Add it.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Adjust default
  #:modules values accordingly.
* tests/gexp.scm ("gexp->derivation, store copy"): New test.

Move part of (gnu build linux-boot) to (gnu build file-systems).

* gnu/build/linux-boot.scm (%ext2-endianness, %ext2-sblock-magic,
  %ext2-sblock-creator-os, %ext2-sblock-uuid, %ext2-sblock-volume-name,
  read-ext2-superblock, ext2-superblock-uuid,
  ext2-superblock-volume-name, disk-partitions,
  partition-label-predicate, find-partition-by-label,
  canonicalize-device-spec, MS_RDONLY, MS_NOSUID, MS_NODEV, MS_NOEXEC,
  MS_BIND, MS_MOVE, bind-mount, check-file-system,
  mount-flags->bit-mask, mount-file-system): Move to...
* gnu/build/file-systems.scm: ... here.  New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/services/base.scm: Use (gnu build file-systems).
* gnu/services/dmd.scm (dmd-configuration-file): Likewise.
* gnu/system.scm (operating-system-activation-script): Likewise.
* gnu/system/linux-initrd.scm (base-initrd): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.

Rename (gnu build linux-initrd) to (gnu build linux-boot).

* gnu/build/linux-initrd.scm: Rename to...
* gnu/build/linux-boot.scm: ... this.
* gnu-system.am (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/build/activation.scm, gnu/build/vm.scm, gnu/services/base.scm,
  gnu/services/dmd.scm, gnu/system.scm, gnu/system/linux-initrd.scm,
  gnu/system/vm.scm: Adjust accordingly.

Move operating system helpers from (guix build …) to (gnu build …).

* guix/build/activation.scm, guix/build/install.scm,
  guix/build/linux-initrd.scm, guix/build/vm.scm: Move to...
* gnu/build: ... here.
* Makefile.am (MODULES): Remove the above guix/build/ files.
* gnu-system.am (GNU_SYSTEM_MODULES): Add the above gnu/build/ files
  here.
* gnu/services/base.scm, gnu/services/dmd.scm, gnu/system.scm,
  gnu/system/linux-initrd.scm, gnu/system/vm.scm,
  guix/scripts/system.scm: Adjust to the new module names.

Merge branch 'master' into core-updates

Conflicts:
	gnu/packages/base.scm

gnu: Split (gnu packages base), adding (gnu packages commencement).

* gnu/packages/base.scm (gnu-make-boot0, diffutils-boot0,
  findutils-boot0, %boot0-inputs, nix-system->gnu-triplet, boot-triplet,
  binutils-boot0, gcc-boot0, perl-boot0, linux-libre-headers-boot0,
  texinfo-boot0, %boot1-inputs, glibc-final-with-bootstrap-bash,
  cross-gcc-wrapper, static-bash-for-glibc, glibc-final,
  gcc-boot0-wrapped, %boot2-inputs, binutils-final, libstdc++,
  gcc-final, ld-wrapper-boot3, %boot3-inputs, bash-final, %boot4-inputs,
  guile-final, gnu-make-final, ld-wrapper, coreutils-final, grep-final,
  %boot5-inputs, %final-inputs, canonical-package, gcc-toolchain,
  gcc-toolchain-4.8, gcc-toolchain-4.9): Move to...
* gnu/packages/commencement.scm: ... here.  New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* build-aux/check-final-inputs-self-contained.scm: Adjust accordingly.
* gnu/packages/cross-base.scm: Likewise.
* gnu/packages/make-bootstrap.scm: Likewise.
* guix/build-system/cmake.scm (cmake-build): Likewise.
* guix/build-system/gnu.scm (standard-packages, gnu-build,
  gnu-cross-build): Likewise.
* guix/build-system/perl.scm (perl-build): Likewise.
* guix/build-system/python.scm (python-build): Likewise.
* guix/build-system/trivial.scm (guile-for-build): Likewise.
* guix/download.scm (url-fetch): Likewise.
* guix/gexp.scm (default-guile): Likewise.
* guix/git-download.scm (git-fetch): Likewise.
* guix/monads.scm (run-with-store): Likewise.
* guix/packages.scm (default-guile): Likewise.
* guix/scripts/package.scm (guix-package): Likewise.
* guix/scripts/refresh.scm: Likewise.
* guix/svn-download.scm (svn-fetch): Likewise.
* tests/builders.scm (%bootstrap-inputs, %bootstrap-search-paths):
  Likewise.
* tests/packages.scm ("GNU Make, bootstrap"): Likewise.
* tests/guix-package.sh: Likewise.
* gnu/services/base.scm: Use 'canonical-package' instead of xxx-final.
* gnu/services/xorg.scm: Likewise.
* gnu/system/vm.scm: Likewise.
* guix/scripts/pull.scm (guix-pull): Likewise.

vm: Make sure disk image initrds load 'usb-storage.ko'.

Reported by David Thompson <dthompson2@worcester.edu>.

* gnu/system/vm.scm (system-disk-image): Add usb-storage.ko to the
  initrd.

vm: Add support for i686.

Partially fixes <http://bugs.gnu.org/18002>.
Reported by David Thompson <dthompson2@worcester.edu>.

* guix/build/vm.scm (qemu-command): Add optional 'system' parameter.
  Special-case "^i[3456]86$".
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Use it.

vm: Enable QEMU support in the freestanding VM image.

* gnu/system/vm.scm (system-qemu-image): Add 'initrd' field.

linux-initrd: Rename 'qemu-initrd' to 'base-initrd'.

* gnu/system/linux-initrd.scm (qemu-initrd): Rename to...
  (base-initrd): ... this.
* gnu/system.scm (<operating-system>)[initrd]: Update accordingly.
* gnu/system/vm.scm (expression->derivation-in-linux-vm,
  system-disk-image, virtualized-operating-system): Likewise.

linux-initrd: Disable QEMU networking by default.

* gnu/system/linux-initrd.scm (qemu-initrd): Remove default value for
  #:qemu-networking?.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass
  #:qemu-networking? #t.
  (system-disk-image): Remove #:qemu-networking? #f.
  (virtualized-operating-system): Pass #:qemu-networking? #t.

linux-initrd: Make the virtio kernel modules optional.

* gnu/system/linux-initrd.scm (qemu-initrd): Add #:virtio? parameter.
  Use it.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass
  'qemu-initrd' #:virtio?.
  (virtualized-operating-system): Likewise.

system: Install /var/guix/profiles/system-1-link on new systems.

* guix/build/install.scm (directives): Add /var/guix/profiles/system.
  (populate-root-file-system): Add 'system' parameter.  Create
  /var/guix/profiles/system-1-link.
* guix/scripts/system.scm (install): Pass OS-DIR to
  'populate-root-file-system'.
* guix/build/vm.scm (initialize-root-partition): Add #:system-directory
  parameter, and pass it to 'populate-root-file-system'.
  (initialize-hard-disk): Add #:system-directory parameter, and pass it
  to 'initialize-root-partition'.
* gnu/system/vm.scm (qemu-image): Add #:os-derivation parameter and pass
  it to 'initialize-hard-disk'.
  (system-disk-image, system-qemu-image,
  system-qemu-image/shared-store): Pass #:os-derivation to 'qemu-image.

Merge branch 'master' into core-updates