gnu: unbound: Update to 1.24.1. [security-fixes]

This security release fixes CVE-2025-11411.

* gnu/packages/dns.scm (unbound): Update to 1.24.1.
[native-inputs]: Add pkg-config.

Change-Id: Ife2840c8657e75e19810634454b20e6cb90c0675
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: ruby-3.4: Update to 3.4.7.

Includes an update to the uri gem addressing CVE-2025-61594.

* gnu/packages/ruby.scm (ruby-3.4): Update to 3.4.7.

Change-Id: Ib5892b938e9ccabf38fc8110ce137f130e0b5031
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: quodlibet: Correct deprecated input.

* gnu/packages/music.scm (quodlibet)[inputs]:
Replace keybinder-3.0 by keybinder.

Change-Id: Ie0b4cd7b4676791116d6c3ce9f5432bd2eda0953

gnu: musikcube: Update to 3.0.5.

* gnu/packages/music.scm (musikcube): Update to 3.0.5.
[inputs]: Remove ffmpeg-4; add ffmpeg.

Change-Id: I63b41bf43b3b4c0bec506ccaaad68eaad3443528

gnu: stringtie: Update to 3.0.2.

* gnu/packages/bioinformatics.scm (stringtie): Update to 3.0.2.

Change-Id: Ie35084c70ad6c91b9e03b09ec6fe4f825bd39dcd

gnu: Remove htslib-1.12.

* gnu/packages/bioinformatics.scm (htslib-1.12): Delete variable.

Change-Id: Id1fd05bddc1b40be0e3186c0e5848a1a0f343ce3

gnu: Remove htslib-for-stringtie.

* gnu/packages/bioinformatics.scm (htslib-for-stringtie): Delete variable.
* gnu/packages/patches/htslib-for-stringtie.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister file.

Change-Id: Idbf3fa982895baed97913e08650cbff6947e8182

gnu: stringtie: Update input.

* gnu/packages/bioinformatics.scm (stringtie)[inputs]:
Replace htslib-for-stringtie by htslib.

Change-Id: I8f197b461ee5f0a0e1b1e1201437d3c7667c2685

gnu: python-doubletdetection: Corrected deprecated input.

* gnu/packages/bioinformatics.scm (python-doubletdetection)[inputs]:
Replace python-vtraag-louvain by python-louvain-igraph.

Change-Id: I27c87906c44bd536d67938c0315e40ca7ee82bf5

gnu: Remove htslib-1.19.

* gnu/packages/bioinformatics.scm (htslib-1.19): Delete variable.

Change-Id: I7804d3ae403dbdf149e3012922f7ac9a382288d7

gnu: Remove samtools-1.14.

* gnu/packages/bioinformatics.scm (samtools-1.14): Delete variable.

Change-Id: I68e8e3ad05841d300897d830f9bcd7fa73c68adc

gnu: Remove bcftools-1.12.

* gnu/packages/bioinformatics.scm (bcftools-1.12): Delete variable.

Change-Id: I805ec24f6eb47d37b2158b85f9d03d5a36999695

gnu: Remove samtools-1.12.

* gnu/packages/bioinformatics.scm (samtools-1.12): Delete variable.

Change-Id: Ibd80f3fb79efab17193f82b4f713ff1f2cbd2470

gnu: Remove htslib-1.10.

* gnu/packages/bioinformatics.scm (htslib-1.10): Delete variable.

Change-Id: I9d1bd86e580de2b9b7fe096e7f86b3a96e6df4d1

gnu: Remove bcftools-1.10.

* gnu/packages/bioinformatics.scm (bcftools-1.10): Delete variable.

Change-Id: I41d5a65b6857debf3586b3d3716bb7a2693645cb

gnu: Remove samtools-1.10.

* gnu/packages/bioinformatics.scm (samtools-1.10): Delete variable.

Change-Id: If3ef93c3473c4fe9c21f062fe619d883fbafb2ec

gnu: Remove htslib-for-samtools-1.2.

* gnu/packages/bioinformatics.scm (htslib-for-samtools-1.2):
Delete variable.

Change-Id: I62c8525d27321acd7fea32e25623e5cbd7e74c33

gnu: Remove samtools-1.2.

* gnu/packages/bioinformatics.scm (samtools-1.2): Delete variable.

Change-Id: I38effe41c32349b5b72754da07fe6696d2f21669

gnu: ghc-xml-conduit, ghc-pcg-random: Correct deprecated input.

* gnu/packages/haskell-xyz.scm (ghc-xml-conduit, ghc-pcg-random)[inputs]:
Replace ghc-cabal-doctest by cabal-doctest.

Change-Id: I2e763313c500567928864da520eeff6b3616f825

gnu: neovim: Correct deprecated input.

* gnu/packages/vim.scm (neovim)[inputs]: Remove msgpack; add msgpack-c.

Change-Id: I6a022c48d2a1914af9b871cf943037e1b23d2c75