~ruther/guix-local

87b90f04891c88cf871bd02d76088f0b3bb2df1e — Andreas Enge 5 months ago 788513d 
gnu: Remove htslib-for-samtools-1.2.

* gnu/packages/bioinformatics.scm (htslib-for-samtools-1.2):
Delete variable.

Change-Id: I62c8525d27321acd7fea32e25623e5cbd7e74c33
patch browse .tar.gz 
1 files changed, 0 insertions(+), 23 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +0 -23
@@ 9750,29 9750,6 @@ data.  It also provides the @command{bgzip}, @command{htsfile}, and
               (base32
                "1rja282fwdc25ql6izkhdyh8ppw8x2fs0w0js78zgkmqjlikmma9"))))))

(define htslib-for-samtools-1.2
  (package/inherit htslib
    (version "1.2.1")
    (source (origin
              (method url-fetch)
              (uri (string-append
                    "https://github.com/samtools/htslib/releases/download/"
                    version "/htslib-" version ".tar.bz2"))
              (sha256
               (base32
                "1c32ssscbnjwfw3dra140fq7riarp2x990qxybh34nr1p5r17nxx"))))
    (arguments
     `(#:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'patch-tests
           (lambda _
             (substitute* "test/test.pl"
               (("/bin/bash") (which "bash"))))))))
    (inputs
     `(("zlib" ,zlib)))
    (native-inputs
     `(("perl" ,perl)))))

(define htslib-for-stringtie
  (package
    (inherit htslib-1.12)