gnu: virglrenderer: Update to 1.0.1.

* gnu/packages/spice.scm (virglrenderer): Update to 1.0.1.
[source]: Update URI to avoid redirect.

Change-Id: I0b132a62b6cc312da857796ce5242a5b7ff475d6
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

gnu: Add xfishtank.

* gnu/packages/toys.scm (xfishtank): New variable.

Reviewed-by: Greg Hogan <code@greghogan.com>
Reviewed-by: Steve George <steve@futurile.net>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

Change-Id: I490fba2d9ded274266d6376adf67c39bf5c9744a

gnu: Add xpenguins.

* gnu/packages/toys.scm (xpenguins): New variable.

Reviewed-by: Greg Hogan <code@greghogan.com>
Reviewed-by: Steve George <steve@futurile.net>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>

Change-Id: I6262092da4d51abaca1d6f01ec2e3f27baca7a01

gnu: cwltool: Update to 3.1.20240112164112.

* gnu/packages/bioinformatics.scm (cwltool): Update to 3.1.20240112164112.
[arguments]: Use G-expressions. Set version in setup.py. Do not attempt to
substitute files cwltool/schemas/v1.1/tests/env-tool1.cwl,
cwltool/schemas/v1.1/tests/env-tool2.cwl and
cwltool/schemas/v1.1/tests/imported-hint.cwl that have been removed in this
release. Do not remove "-n auto" from pytest flags.
[inputs]: Add python-cwl-utils and python-spython.
[native-inputs]: Add python-pytest-xdist.

Change-Id: If1be7cdf39b767c5ef2a1dbddfdc95f59ea98cb6

Change-Id: I2ba81e8569abcf43cd0fad33daab1e4f8689e77f
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

gnu: Add python-spython.

* gnu/packages/linux.scm (python-spython): New variable.

Change-Id: I758f879608bc4b0c0411918b4ee0fa9cc3abc639
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

gnu: Add python-cwl-utils.

* gnu/packages/bioinformatics.scm (python-cwl-utils): New variable.

Change-Id: I9347c80c0e866b89a7d432091fbcf1bc009209a5
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

gnu: Add python-cwl-upgrader.

* gnu/packages/bioinformatics.scm (python-cwl-upgrader): New variable.

Change-Id: I2022239840e9fe9e745689ef8b8bf4279be2ff9e
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

gnu: Add python-cwlformat.

* gnu/packages/bioinformatics.scm (python-cwlformat): New variable.

Change-Id: Ib2d79e350ab100c61c7afe2d5d3eafc72146e493
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

gnu: python-schema-salad: Update to 8.5.20240102191335.

* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
8.5.20240102191335.
[native-inputs]: Add python-pytest-xdist.
[propagated-inputs]: Add python-importlib-resources and
python-mypy-extensions. Remove python-lockfile, python-rdflib-jsonld and
python-typing-extensions. Replace python-mistune with python-mistune-next.
[arguments]: Use G-expressions. Set exact version number. Skip more tests that
require network access.

Change-Id: I4de4704f58f40fdf9bf4c02e41c2c353beaa3eb2
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

gnu: python-ruamel-yaml: Update to 0.18.6.

* gnu/package/serialization.scm (python-ruamel-yaml): Update to 0.18.6.
(python-ruamel.yaml-0.16): New variable.
* gnu/packages/package-management.scm (conda)[inputs]: Replace
python-ruamel.yaml with python-ruamel.yaml-0.16.
* gnu/packages/backup.scm (borgmatic)[inputs]: Replace python-ruamel.yaml with
python-ruamel.yaml-0.16.
* gnu/packages/python-xyz.scm (dynaconf)[inputs]: Replace python-ruamel.yaml
with python-ruamel.yaml-0.16.

Change-Id: Iff9eeeae043c9547d93a6c780f0c30bd760490d9

Change-Id: I43cad7e3936f62d209fbba7e86b93519cfc1c1ba
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

gnu: python-ruamel.yaml.clib: Update to 0.2.8.

* gnu/packages/serialization.scm (python-ruamel.yaml.clib): Update to 0.2.8.

Change-Id: I18172bb4cad80b0e1a5db11fbc8fb937f46a1862
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>

gnu: tigervnc-client: Update to 1.13.1.

* gnu/packages/vnc.scm (tigervnc-client): Update to 1.13.1.
(tigervnc-server): Likewise.

Change-Id: I88157aabfe43bb7273d465fea4ef5bf31979d8e9

gnu: emacs-tramp: Update to 2.6.2.1.

* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.6.2.1.
[inputs]: Delete field.

Change-Id: I13a2f9c91dcfbd3152584fabd35597928ffe1de5

gnu: Add neovim-dispatch.

* gnu/packages/vim.scm (neovim-dispatch): New variable.

Change-Id: I458b0d390168170b47119c7f592042177f1402ae

gnu: vim-dispatch: Update to 1.8-1.4c695bc.

* gnu/packages/vim.scm (vim-dispatch): Update to 1.8-1.4c695bc.

Change-Id: I70b53f048c365fda47ba8820392b1f94b6bcfedd

gnu: Add neovim-asyncrun.

* gnu/packages/vim.scm (neovim-asyncrun): New variable.

Change-Id: I8716ff4a1beeee3364973c12e0e6243a1b21afe6

gnu: vim-asyncrun: Update to 2.12.4.

* gnu/packages/vim.scm (vim-asyncrun): Update to 2.12.4.

Change-Id: I316eb22c71ac4e807b9fd4590c7819478e4f7260

gnu: universal-ctags: Update to 6.1.20240218.0.

* gnu/packages/code.scm (universal-ctags): Update to 6.1.20240218.0.

Change-Id: I3d4b19d0ba002d809cb5e659899965d3f62e8e1a

gnu: Remove duplicate module import.

* gnu/packages/mail.scm: Remove extra import of (guix utils).

Change-Id: I757af2e1249e687aedb9774986304c6366c625a9

gnu: Add libdbx.

* gnu/packages/mail.scm (libdbx): New variable.

Change-Id: Ia50bec92c5de72e4037cbf59ee7ecc6bf657fdd0