gnu: r-listenv: Update to 0.9.1.

* gnu/packages/cran.scm (r-listenv): Update to 0.9.1.

Change-Id: I998a9d35b176ed8dd038fd6392f46b4052e56dd7

gnu: r-phylobase: Update to 0.8.12.

* gnu/packages/cran.scm (r-phylobase): Update to 0.8.12.

Change-Id: I4d022d85cdb6f79fae167bfd7c52a0c2620b0092

gnu: r-densityclust: Update to 0.3.3.

* gnu/packages/cran.scm (r-densityclust): Update to 0.3.3.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.

Change-Id: Ia6b5737e2225e67fa064f031d985c076694ec9ce

gnu: r-interp: Update to 1.1-6.

* gnu/packages/cran.scm (r-interp): Update to 1.1-6.

Change-Id: I846729e1637fc0f8762cf8a235cc78df2c1eb810

gnu: r-zip: Update to 2.3.1.

* gnu/packages/cran.scm (r-zip): Update to 2.3.1.

Change-Id: I20ff34e492271063d6baf37f59f6da181c1d7805

gnu: r-nestedcv: Update to 0.7.4.

* gnu/packages/cran.scm (r-nestedcv): Update to 0.7.4.
[propagated-inputs]: Add r-rhpcblasctl.

Change-Id: Ica97cf7c960125543210c48851861d7826a8f8aa

gnu: r-laeken: Update to 0.5.3.

* gnu/packages/cran.scm (r-laeken): Update to 0.5.3.

Change-Id: I9ab9a89d88511b80efb912119ec81a24fafceb84

gnu: r-sp: Update to 2.1-3.

* gnu/packages/cran.scm (r-sp): Update to 2.1-3.

Change-Id: I111d108e6f144ecfdecf5e5ff94b6b11110a9395

gnu: r-powerlaw: Update to 0.80.0.

* gnu/packages/cran.scm (r-powerlaw): Update to 0.80.0.

Change-Id: I1b3c185ac4a8748698fe9218c262620b42f5f06d

gnu: r-httpuv: Update to 1.6.14.

* gnu/packages/cran.scm (r-httpuv): Update to 1.6.14.

Change-Id: I1f650010cce97020f7b563adfcd74d7e4dec4981

gnu: r-ga: Update to 3.2.4.

* gnu/packages/cran.scm (r-ga): Update to 3.2.4.

Change-Id: I698d5c3eda6598c435fcf37b5e7eaaf5c4e15e63

gnu: r-ggm: Update to 2.5.1.

* gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1.
[propagated-inputs]: Add r-biocmanager.

Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47

gnu: r-rjava: Update to 1.0-11.

* gnu/packages/cran.scm (r-rjava): Update to 1.0-11.
[source]: Remove snippet.
[arguments]: Remove 'replace-bundled-minified-JavaScript phase.
[native-inputs]: Remove esbuild.

Change-Id: I008810b6919412023fc419d9cbadfea0fe2892bb

gnu: r-catdata: Update to 1.2.4.

* gnu/packages/cran.scm (r-catdata): Update to 1.2.4.
[native-inputs]: Add r-knitr.

Change-Id: I7e2873a612f114d7124d5787ff70a8bf0ffefe93

gnu: r-r-devices: Update to 2.17.2.

* gnu/packages/cran.scm (r-r-devices): Update to 2.17.2.
[arguments]: Add 'set-HOME phase.
[native-inputs]: Add r-r-rsp.

Change-Id: Iaaead01e690e95971148ae063aa7af589969d39c

gnu: r-igraph: Update to 2.0.1.1.

* gnu/packages/cran.scm (r-igraph): Update to 2.0.1.1.
[properties]: Tell updater to keep extra native input "which".
[native-inputs]: Add pkg-config and which.

Change-Id: Id56c68784d192f7a3031a338fe63a4c17799c605

gnu: r-antiword: Update to 1.3.3.

* gnu/packages/cran.scm (r-antiword): Update to 1.3.3.
[properties]: Tell updater not to remove "antiword" input.
[arguments]: Use G-expression.

Change-Id: Ifdbf80f546b0ab3abfc3b8002ba01b46c9105a1c

gnu: r-sapa: Patch call of dstebz routine.

* gnu/packages/patches/r-sapa-lapack.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cran.scm (r-sapa)[source]: Add it.

Change-Id: I17354c4e8b3a0f322e17c9a1e17bc37c93630105

gnu: r-with-tests: Prevent compression of libraries.

Compression prevents Guix from detecting references.
This is a follow-up to commit ff0d34a29bc0f19b1dd2714fc0a3bd73a244aebe.

Reported-by: Jonas Freimuth.

* gnu/packages/statistics.scm (r-with-tests)[arguments]: Do not compress
included libraries like "parallel".

Change-Id: I278d19c1504d8ac33a1fc4a941467705a37d574d

gnu: r-minimal, r-with-tests: Use G-expressions.

* gnu/packages/statistics.scm (r-minimal, r-with-tests)[arguments]: Use
G-expressions.

Change-Id: I241297444cdb261dfc9901efd73c436a7ccf0acf