gnu: python-scanpy: Update to 1.10.4. * gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.10.4. [arguments]: Update list of disabled tests; rename phase 'discover-anndata to 'add-anndata-source. [native-inputs]: Add python-pytest-mock. Change-Id: I409678c67d15f3d3e4147be68c7a987c0e095d23
gnu: python-legacy-api-wrap: Update to 1.4.1. * gnu/packages/python-xyz.scm (python-legacy-api-wrap): Update to 1.4.1. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-coverage, python-hatch-vcs, python-hatchling, and python-pytest. [propagated-inputs]: Remove python-get-version, python-pytest, python-pytest-black, python-pytest-cov, and python-setuptools. Change-Id: I56ccdc6c9fd8b5e6bcbfcf9255f02949e8f1e705
gnu: python-omnipath: Update to 1.0.8-0.3d16134. * gnu/packages/python-web.scm (python-omnipath): Update to 1.0.8-0.3d16134. [source]: Fetch from git repository. [arguments]: Remove phase 'relax; update list of disabled tests; add phase 'pretend-version. [native-inputs]: Add nss-certs-for-test. Change-Id: I9e980702ac8e5662971a9c4bb88a5789758b48ed
gnu: python-pypika-tortoise: Add missing input. * gnu/packages/databases.scm (python-pypika-tortoise)[native-inputs]: Add python-setuptools. Change-Id: Ibe96738292a0948cae2add596fe76ee349c9dfeb
gnu: python-asgi-lifespan: Update to 2.1.0. * gnu/packages/python-web.scm (python-asgi-lifespan): Update to 2.1.0. [arguments]: Update list of disabled tests; add phase 'compatibility. [native-inputs]: Add python-httpx. Change-Id: Ib4c01ec059920481eefbbe908ba2fdaa9cf3484d
gnu: python-fastapi-pagination-minimal: Update to 0.12.34. * gnu/packages/python-web.scm (python-fastapi-pagination-minimal): Update to 0.12.34. [propagated-inputs]: Replace python-pydantic with python-pydantic-2. [native-inputs]: Replace poetry with python-poetry-core. (python-fastapi-pagination)[arguments]: Run unit tests; add phase 'patch-tests. [propagated-inputs]: Replace python-pydantic with python-pydantic-2. [native-inputs]: Add python-aiosqlite, python-asgi-lifespan, python-asyncpg, python-faker, python-httpx, python-poetry-core, python-pytest, python-pytest-asyncio, python-sqlalchemy, and python-typing-extensions. Change-Id: Icab22aa811c70762296ef47723052702b33c6762
gnu: python-anndata: Update to 0.11.1. * gnu/packages/python-xyz.scm (python-anndata): Update to 0.11.1. [arguments]: Update list of disabled tests; do not patch conftest. [native-inputs]: Add python-pytest-mock. Change-Id: I6f087bb19a71006fd9f9c2c92150fa4d038fa2a6
gnu: python-wrapt: Update to 1.17.0. * gnu/packages/python-xyz.scm (python-wrapt): Update to 1.17.0. [arguments]: Enable tests. [native-inputs]: Add python-pytest, python-setuptools, and python-wheel. Change-Id: Ib2e973ec7b09454588bbbbdd5d8446afc53e835b
gnu: python-pytorch-geometric: Disable one test. * gnu/packages/machine-learning.scm (python-pytorch-geometric)[arguments]: Disable one more test. Change-Id: Id69243e70c39b9307745b08156ed956f23d8daa4
gnu: Remove python-starlette-for-fastapi-0.88. * gnu/packages/python-web.scm (python-starlette-for-fastapi-0.88): Delete variable. Change-Id: Idf8b453834dee2051cec8b7fc34f6681aa8480c6
gnu: python-fastapi: Relax requirements. * gnu/packages/python-web.scm (python-fastapi)[arguments]: Add phase 'relax-requirements. Change-Id: I639d894eb1ee207cddcaa52344e48291c7a2a5c9
gnu: python-starsessions: Disable one more test. * gnu/packages/python-web.scm (python-starsessions)[arguments]: Disable one more test. Change-Id: I9a10805eb73f829f12f2b41d1d25b6c41693c9ef
gnu: python-starsessions: Update input. * gnu/packages/python-web.scm (python-starsessions)[propagated-inputs]: Replace python-starlette-for-fastapi-0.88 with python-starlette. Change-Id: I07d5bf85ae9980e862dad456d2cde7f1adc1a0ff
gnu: Remove python-fastapi-for-pytorch-lightning. * gnu/packages/python-web.scm (python-fastapi-for-pytorch-lightning): Remove variable. Change-Id: I5cc49baae28ee512698e2e4e25ed99b3655d653a
gnu: Rename python-starsessions-for-pytorch-lightning. * gnu/packages/python-web.scm (python-starsessions-for-pytorch-lightning): Rename this variable... (python-starsessions): ...to this. Change-Id: I237b83f380ce0cd4aee5021f646e66700eeec746
gnu: python-lightning-cloud: Update to 0.5.70. * gnu/packages/machine-learning.scm (python-lightning-cloud): Update to 0.5.70. [propagated-inputs]: Add python-boto3 and python-protobuf; replace python-fastapi-for-pytorch-lightning with python-fastapi. Change-Id: I4c93a0120639af230fdaf53703c688ce3012e8e0
gnu: python-pytorch-lightning: Update to 2.5.0.post0. * gnu/packages/machine-learning.scm (python-pytorch-lightning): Update to 2.5.0.post0. [arguments]: Only run core tests. [propagated-inputs]: Replace python-fastapi-for-pytorch-lightning with python-fastapi; remove python-starsessions-for-pytorch-lightning. Change-Id: I1bf392e19cc06194fdf662f07aeccbafc8d0ae4e
gnu: python-path-bootstrap: Update to 17.1.0. * gnu/packages/python-xyz.scm (python-path-bootstrap): Update to 17.1.0. Change-Id: I7a83d6cffb2b3818691eaae3a3c787da3c60ff72
gnu: python-fastapi: Update to 0.115.6. * gnu/packages/python-web.scm (python-fastapi): Update to 0.115.6. [arguments]: Update list of disabled tests. [propagated-inputs]: Add python-fastapi-cli, python-pydantic-2, and python-pydantic-settings; remove python-pydantic. [native-inputs]: Delete python-databases, python-isort, python-jose, python-mypy, python-hatchling, python-passlib, python-peewee, python-types-orjson, and python-types-ujson. Change-Id: Id2ea9e1376dbfb654a62e6b8218c49adeda68014
gnu: python-pydantic-settings: Update to 2.7.1. * gnu/packages/python-xyz.scm (python-pydantic-settings): Update to 2.7.1. [arguments]: Ignore tests from test_docs.py. [propagated-inputs]: Remove python-pyaml and python-tomli. Change-Id: Ie43e098c1a7787923a3cc92313832089b835a986