~ruther/guix-local

ref: d4e06997e4d6288111801c852b0b8a10177815e9 guix-local/gnu/packages/bioconductor.scm -rw-r--r-- 1.0 MiB
1ec0fb5d — Ricardo Wurmus 3 months ago
gnu: r-abaenrichment: Adjust for testthat compatibility.

* gnu/packages/bioconductor.scm (r-abaenrichment)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I532339067402d2465b793bb16f6b137c425170ff
5492b500 — Ricardo Wurmus 3 months ago
gnu: r-tcgautils: Update to 1.30.1.

* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.30.1.

Change-Id: Id7b543c1418e31606733ce7a700dab540116ff12
6e31271d — Ricardo Wurmus 3 months ago
gnu: r-annotationhubdata: Add missing input.

* gnu/packages/bioconductor.scm (r-annotationhubdata)[native-inputs]: Add
r-genomeinfodbdata.

Change-Id: Iaf0e3635d88c26ff4ed62e638eefe5973b695281
99449eaf — Ricardo Wurmus 3 months ago
gnu: r-metabocoreutils: Update to 1.18.1.

* gnu/packages/bioconductor.scm (r-metabocoreutils): Update to 1.18.1.

Change-Id: I20c617e069a0b385e31f6e9bbf31524d81957048
8252a13f — Ricardo Wurmus 3 months ago
gnu: r-ihw: Add missing test inputs.

* gnu/packages/bioconductor.scm (r-ihw)[properties]: Record
updater-extra-native-inputs.
[native-inputs]: Add r-ggplot2 and r-scales.

Change-Id: I9897da6c9e18ccd4ed401237414c340088a00614
c8085b80 — Ricardo Wurmus 3 months ago
gnu: r-abn: Update to 3.1.12.

* gnu/packages/bioconductor.scm (r-abn): Update to 3.1.12.
[propagated-inputs]: Add r-glmmtmb and r-jsonlite.

Change-Id: Iaf9e421095cff8ce2acfa46f59ff513486cbddee
519a57ba — Ricardo Wurmus 3 months ago
gnu: r-tximeta: Update to 1.28.0.

* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.28.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.
[native-inputs]: Add r-rmarkdown.

Change-Id: I3dbc7b55c46db5ce0d39b8e107ac0aa58a25c71c
63462c07 — Ricardo Wurmus 3 months ago
gnu: r-tricycle: Update to 1.18.0.

* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.18.0.

Change-Id: Ie2c729a6cdf6660349b4b5ea1d32195769cf2a04
950b72b0 — Ricardo Wurmus 3 months ago
gnu: r-tcgabiolinks: Update to 2.38.0.

* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.38.0.

Change-Id: Ifb06afbef1835e405fd4bbec07e2de48401c432a
c3c37b84 — Ricardo Wurmus 3 months ago
gnu: r-biscuiteer: Update to 1.24.0.

* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.24.0.

Change-Id: Ia714803c395f6e79aad4b3aa837dcaa944b83077
c8ddd5a8 — Ricardo Wurmus 3 months ago
gnu: r-omicade4: Update to 1.50.0.

* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.50.0.

Change-Id: Ia9a2b0ba52c2845f355476211a57690d81cdfa51
830314ef — Ricardo Wurmus 3 months ago
gnu: r-dmrseq: Update to 1.30.0.

* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.30.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: Id0f5d693c9aeeff1c185e50745655db214f834af
10543af6 — Ricardo Wurmus 3 months ago
gnu: r-dada2: Update to 1.38.0.

* gnu/packages/bioconductor.scm (r-dada2): Update to 1.38.0.

Change-Id: Id7bac2a2338c32f1df0f2387730f799bce257478
13604072 — Ricardo Wurmus 3 months ago
gnu: r-biotmle: Update to 1.34.0.

* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.34.0.

Change-Id: I657e29e63ca5bcbe17bb7cbdaca90c22ca5a8a2d
f58601d8 — Ricardo Wurmus 3 months ago
gnu: r-biotip: Update to 1.24.0.

* gnu/packages/bioconductor.scm (r-biotip): Update to 1.24.0.
[propagated-inputs]: Add r-doparallel and r-foreach.

Change-Id: Ic00cb277d88865b12b102646e08f0b06842aef5d
93c5b348 — Ricardo Wurmus 3 months ago
gnu: r-bioqc: Update to 1.38.0.

* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.38.0.

Change-Id: Ib1601aa589c01e3c785085cbd12aebe2f53868a4
b32387c3 — Ricardo Wurmus 3 months ago
gnu: r-bionet: Update to 1.70.0.

* gnu/packages/bioconductor.scm (r-bionet): Update to 1.70.0.

Change-Id: Ie2af094202600dd4f3bbd1f72dad634a3012e6cf
766e19ea — Ricardo Wurmus 3 months ago
gnu: r-bionero: Update to 1.18.0.

* gnu/packages/bioconductor.scm (r-bionero): Update to 1.18.0.

Change-Id: I9fecc02d585a01a4e0f4680a7d894552fa636fac
e736705c — Ricardo Wurmus 3 months ago
gnu: r-biomvrcns: Update to 1.50.0.

* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.50.0.

Change-Id: I2078e79b53c84f8db1687f5f684b210532676c3d
33783c23 — Ricardo Wurmus 3 months ago
gnu: r-biomvcclass: Update to 1.78.0.

* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.78.0.

Change-Id: I51769afac79202a5b1754c40f0ec7af27890a5a1
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