gnu: python-parabam: Update to 3.0.1-0.be5bd35, fix build.

* gnu/packages/bioinformatics.scm (python-parabam): Update to
be5bd35012d37df8cfa88771325a0273519c8c98 commit.
[source]: Switch to git-fetch.
[arguments] <tests?>: No tests.
<phases>: Add 'cythonize.
[native-inputs]: Remove python-wheel; add python-cython.

Change-Id: I56e2dbeac106f2942289e2b751520b3bf1abb60f

gnu: python-schema-0.5: Deprecate in favor of python-schema.

There is no any users in Guix main channel, keeping the symbol for one
month.

* gnu/packages/python-xyz.scm (python-schema-0.5): Deprecate variable.

Change-Id: I099b91df49448eae5f38b066eca0ae6f61f80a5c

gnu: python-usbrelay: Fix build.

* gnu/packages/hardware.scm (python-usbrelay): Fix build.
[arguments] <#:phases>: Replace 'check phase.
[native-inputs]: Remove python-wheel.

Change-Id: I8b1de9158c277e83775fad4cab9ce56f87a8caab

gnu: python-paho-mqtt: Update to 2.1.0.

* gnu/packages/messaging.scm (python-paho-mqtt): Update to 2.1.0.
[build-system]: Switch to pyproject-build system.
[arguments] <#:phases>: Add 'patch-tests phase, remove replaced 'check
phase.
[native-inputs]: Add python-hatchling.

Change-Id: I150e2854bd92c66abc751ef8f9b9923d9e90dee4

gnu: python-ws4py: Update to 0.6.0.

* gnu/packages/python-web.scm (python-ws4py): Update to 0.6.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Use gexps.
<#:phases>: remove 'python3.7-compatibility phase.
[native-inputs]: Add python-setuptools and python-pytest.

Change-Id: Ia1c4d66f329ca0acd32d2b934836347b19cb711a

gnu: python-gipc: Enable tests.

* gnu/packages/python-xyz.scm (python-gipc)
[arguments] <tests?>: Enable them.
<phases>: Add 'adjust-for-pytest-8 phase.

Change-Id: Ib118dfd8f6cff1400e19880f1a96460fbac343b9

gnu: python-asprin: Fix build.

* gnu/packages/potassco.scm (python-asprin): Fix build.
[arguments] <#:phases>: Replace 'check phase.
[native-inputs]: Remove python-wheel.

Change-Id: I1f5b6418e50812bef5ba565877e8cdf4cd04d632

Revert "gnu: python-fenics-ufl: Update to 2025.1.0."

This reverts commit 5c522a1abff0b60d3a3d526605ef41bbf354162e.

The update breaks depending packages.

gnu: Add python-aiohttp-retry.

* gnu/packages/python-web.scm (python-aiohttp-retry): New variable.

Change-Id: I46f42d0f6a205a264eb1e9c9d00e3cd792dbfe3c
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-slepc4py: Update to 3.24.0.

* gnu/packages/maths.scm (python-slepc4py): Update to 3.24.0.

Change-Id: I23786bf36ed8dbbdad7f4b18e5985075487c4bcd

gnu: python-petsc4py: Update to 3.24.0.

* gnu/packages/maths.scm (python-petsc4py): Update to 3.24.0.

Change-Id: I8c530eadc777bfb26e7539594355f11c03c0f062

gnu: slepc: Update to 3.24.0.

* gnu/packages/maths.scm (slepc): Update to 3.24.0.

Change-Id: I7924a3e1248c8c056f0978784f67f2723437d1f9

gnu: petsc-openmpi: Delete phase.

* gnu/packages/maths.scm (petsc-openmpi)[arguments]<#:phases>
{adjust-pt-scotch-library-names}: Remove.

Change-Id: Id138e82e4ab9f7f68991dfe8f835cc95cd7e3250

gnu: petsc: Update to 3.24.0.

* gnu/packages/maths.scm (petsc): Update to 3.24.0.

Change-Id: Ibf05808578d2c7f50c3949458945ca93725653ec

gnu: luminance-hdr: Update to 2.6.1.1.

* gnu/packages/image-viewers.scm (luminance-hdr): Update to 2.6.1.1.

Change-Id: Iac0cd21a041275110e5dcee9e91653f31a2e990e

gnu: qtwebengine-5: Update to 5.15.17.

* gnu/packages/qt.scm (qtwebengine-5): Update to 5.15.17.
[native-inputs]: Add python-beautifulsoup4.

Fixes: guix/guix#3036
Change-Id: I10fab80c4697c62152d614b7949348094131b9aa

gnu: qtvirtualkeyboard-5: Update to 5.15.17.

* gnu/packages/qt.scm (qtvirtualkeyboard-5): Update to 5.15.17.

Change-Id: I17a334ca9f98e96f5371da995768d92afbe7170a

gnu: qtspeech-5: Update to 5.15.17.

* gnu/packages/qt.scm (qtspeech-5): Update to 5.15.17.

Change-Id: Ia1890655aadd469a17e2fb831c8968efe4af36df

gnu: qtnetworkauth-5: Update to 5.15.17.

* gnu/packages/qt.scm (qtnetworkauth-5): Update to 5.15.17.

Change-Id: I649966daf688335b8ec829d04f807fcf41ccece9

gnu: qtdatavis3d-5: Update to 5.15.17.

* gnu/packages/qt.scm (qtdatavis3d-5): Update to 5.15.17.

Change-Id: Ia3018fb04da63715d01130ab837236e79992c039