gnu: Move content of openssl module into tls module.
* gnu/packages/openssl.scm (openssl, perl-net-ssleay): Move to...
* gnu/packages/tls.scm: ...here.
* gnu/packages/openssl.scm: Delete file.
* gnu-system.am (GNU_SYSTEM_MODULES): Unregister deleted file.
* gnu/packages/{admin.scm, bittorrent.scm, certs.scm, ci.scm,
cyrus-sasl.scm, databases.scm, dns.scm, ebook.scm, enlightenment.scm,
gnunet.scm, libreoffice.scm, links.scm, mail.scm, messaging.scm,
networking.scm, ntp.scm, openldap.scm, package-management.scm, pdf.scm,
python.scm, qt.scm, rdesktop.scm, rdf.scm, ruby.scm, ssh.scm,
synergy.scm, tor.scm, version-control.scm, video.scm, vpn.scm,
w3m.scm, web.scm, weechat.scm, xiph.scm}: Adapt module import.
gnu: Rename module gnutls to tls.
* gnu/packages/gnutls.scm: Rename to...
* gnu/packages/tls.scm: ... this. Change module name accordingly.
* gnu/packages/{admin.scm, cups.scm, curl.scm, dc.scm, dns.scm, emacs.scm,
ftp.scm, gnome.scm, gnunet.scm, gnupg.scm, gsasl.scm, lynx.scm,
mail.scm, messaging.scm, package-management.scm, shishi.scm,
task-management.scm, version-control.scm, video.scm, vpn.scm,
webkit.scm, weechat.scm, wget.scm, wine.scm, xml.scm}: Adapt module
import to new name.
* gnu-system.am (GNU_SYSTEM_MODULES): Rename gnutls module to tls.
gnu: avidemux: Drop version 2.5.
* gnu/packages/video.scm (avidemux-2.5): Delete variable.
gnu: Add prodigal.
* gnu/packages/bioinformatics.scm (prodigal): New variable.
gnu: shogun: Build with install RPATH.
* gnu/packages/bioinformatics.scm (shogun)[arguments]: Add configure flag to
build with install RPATH.
gnu: englightenment: Use https URLs.
* gnu/packages/enlightenment.scm (efl, elementary, emotion-generic-players,
terminology, enlightenment): Use https instead of http since the latter
redirects to the former.
gnu: enlightenment: Update to 0.19.5.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.5.
gnu: emotion-generic-loaders: Update to 1.14.0.
* gnu/packages/enlightenment.scm (emotion-generic-loaders): Update
to 1.14.0.
gnu: evas-generic-loaders: Update to 1.14.0.
* gnu/packages/enlightenment.scm (evas-generic-loaders): Update
to 1.14.0.
gnu: elementary: Update to 1.14.2.
* gnu/packages/enlightenment.scm (elementary): Update to 1.14.2.
gnu: efl: Update to 1.14.2.
* gnu/packages/enlightenment.scm (efl): Update to 1.14.2.
gnu: Add ruby-rake-compiler.
* gnu/packages/ruby.scm (ruby-rake-compiler): New variable.
gnu: eigen: Update to 3.2.5.
* gnu/packages/algebra.scm (eigen): Update to 3.2.5.
gnu: icecat: Fix CVE-2015-{2722,2724,2728,2733,2735,2736,2738,2739,2740,2743}.
* gnu/packages/patches/icecat-CVE-2015-2722-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2722-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2724-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2724-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2724-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-2724-pt4.patch,
gnu/packages/patches/icecat-CVE-2015-2728-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2728-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2733-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2733-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2735.patch,
gnu/packages/patches/icecat-CVE-2015-2736.patch,
gnu/packages/patches/icecat-CVE-2015-2738.patch,
gnu/packages/patches/icecat-CVE-2015-2739.patch,
gnu/packages/patches/icecat-CVE-2015-2740.patch,
gnu/packages/patches/icecat-CVE-2015-2743.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
gnu: unrtf: Fix download location.
* gnu/packages/unrtf.scm (unrtf): Fix download location.
gnu: r: Replace "atlas" with "openblas".
* gnu/packages/statistics.scm (r)[inputs]: Replace "atlas" with "openblas".
gnu: gnutls: Move man3 pages to "doc" output.
* gnu/packages/gnutls.scm (gnutls)[arguments]: Add #:phases.
gnu: qt-4: Remove reference from "out" to "doc".
* gnu/packages/qt.scm (qt-4)[arguments]: Remove '-docdir' configure flag.
Add 'move-doc' phase.
gnu: qt-4: Use a more standard directory layout.
* gnu/packages/qt.scm (qt-4)[arguments]: Pass -datadir, -importdir,
-plugindir, and -translationdir.
gnu: qt-4: Use 'modify-phases'.
* gnu/packages/qt.scm (qt-4)[arguments]: Use 'modify-phases' instead of
'alist-replace'.