gnu: libsndfile: Fix CVE-2017-12562.

* gnu/packages/patches/libsndfile-CVE-2017-12562.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pulseaudio.scm (libsndfile)[replacement]: New field.
(libsndfile/fixed): New variable.

gnu: gnome-maps: Add missing inputs.

* gnu/packages/geo.scm (gnome-maps)[inputs]: Add libsecret, libsoup,
libgweather, gdk-pixbuf, glib-networking, and gsettings-desktop-schemas.

gnu: powertabeditor: Fix build.

* gnu/packages/music.scm (powertabeditor)[arguments]: Add phase
"fix-boost-bug" to fix build with boost 1.64.

gnu: python2-mmtk: Update to 2.7.11

* gnu/packages/python.scm (python2-mmtk): Update to 2.7.11.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: git: Update to 2.16.1.

* gnu/packages/version-control.scm (git): Update to 2.16.1.

gnu: usbutils: Update to 009.

* gnu/packages/linux.scm (usbutils): Update to 009.

gnu: iw: Update to 4.14.

* gnu/packages/linux.scm (iw): Update to 4.14.

gnu: wget: Update to 1.19.4.

* gnu/packages/wget.scm (wget): Update to 1.19.4.

gnu: gnunet: Use invoke.

* gnu/packages/gnunet.scm (gnurl)[arguments]: Substitute invoke for system*.
(guile-gnunet)[arguments]: Likewise.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: Add fgallery.

* gnu/packages/graphics.scm (fgallery): New variable.

gnu: rtags: Fix the bundling issue.

* gnu/packages/patches/rtags-separate-rct.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/code.scm (rtags): Dependencies no longer bundled.
[source]: Use tarball release.  Use the patch to link rct.
Substitute corresponding headers.
[native-inputs]: Add new dependencies.
[inputs]: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: rct: Add missing headers, enable RTTI.

* gnu/packages/patches/rct-add-missing-headers.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cpp.scm (rct): Use the patch, enable RTTI.
[source]: Use the patch to add missing headers from installation.
[arguments]: Enable RTTI in configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add python-yapf.

* gnu/packages/python.scm (python-yapf, python2-yapf): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add 'pyconfigure'.

* gnu/packages/autotools.scm (pyconfigure): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: gnurl: Add '--with-ca-bundle' path to configure-flags.

As a fork of cURL, gnURL on Guix needs to be made aware of the certificate store
to prevent the well-known issue we have.

* gnu/packages/gnunet.scm (gnurl)[configure-flags]: Add '--with-ca-bundle=/etc/ssl/certs/ca-certificates.crt'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: parallel: Update source hash.

The upstream tarball changed almost immediately after release.
See https://lists.gnu.org/archive/html/guix-devel/2018-01/msg00319.html.

* gnu/packages/parallel.scm (parallel)[source]: Update hash.

Revert "gnu: wxwidgets: Use webkitgtk-2.4."

This reverts commit 8a58182c12193ae27359591c92febfdd602411f4.

system: Add A20 OLinuXino LIME installer.

* gnu/bootloader/u-boot.scm (u-boot-a20-olinuxino-lime-bootloader):
New exported variable.
* gnu/packages/bootloaders.scm (u-boot-a20-olinuxino-lime):
New exported variable.
* gnu/system/install.scm (a20-olinuxino-lime-installation-os):
New exported variable.

gnu: Add r-argparser.

* gnu/packages/cran.scm (r-argparser): New variable.

gnu: star: Make reproducible.

* gnu/packages/bioinformatics.scm (star)[arguments]: Add build phase
"make-reproducible".