~ruther/guix-local

ref: c033c1958d50e58d84b2ebb41b15040ed0f22431 guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 271.3 KiB
66daf78c — Ben Woodcroft 9 years ago 
gnu: Add seqtk.

* gnu/packages/bioinformatics.scm (seqtk): New variable.
2642231b — Leo Famulari 9 years ago 
gnu: bowtie: Update to 2.2.9.

* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.9.
d108c212 — Ricardo Wurmus 9 years ago 
gnu: r-org-mm-eg-db: Update to 3.3.0.

* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.3.0.
6ab7ca24 — Ricardo Wurmus 9 years ago 
gnu: r-org-dm-eg-db: Update to 3.3.0.

* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.3.0.
019be090 — Ricardo Wurmus 9 years ago 
gnu: r-org-ce-eg-db: Update to 3.3.0.

* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.3.0.
5cc7cff6 — Ricardo Wurmus 9 years ago 
gnu: r-org-hs-eg-db: Update to 3.3.0.

* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.3.0.
401528b2 — Ricardo Wurmus 9 years ago 
gnu: r-go-db: Update to 3.3.0.

* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.3.0.
44f711db — Ricardo Wurmus 9 years ago 
gnu: r-biocparallel: Update to 1.6.6.

* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.6.
10e479a7 — Ricardo Wurmus 9 years ago 
gnu: r-genomicranges: Update to 1.24.3.

* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.3.
01ebbb1b — Ricardo Wurmus 9 years ago 
gnu: r-limma: Update to 3.28.21.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.21.
bbf53cb5 — Ricardo Wurmus 9 years ago 
gnu: r-variantannotation: Update to 1.18.7.

* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.7.
4fa7091d — Ricardo Wurmus 9 years ago 
gnu: r-genomeinfodb: Update to 1.8.7.

* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.7.
3b851cd4 — Ricardo Wurmus 9 years ago 
gnu: r-seqinr: Update to 3.3-1.

* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-1.
[propagated-inputs]: Add "r-segmented".
2b1cc79d — Ricardo Wurmus 9 years ago 
gnu: r-s4vectors: Update to 0.10.3.

* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.3.
0b54b4c9 — Ricardo Wurmus 9 years ago 
gnu: r-acsnminer: Update to 0.16.8.25.

* gnu/packages/bioinformatics.scm (r-acsnminer): Update to 0.16.8.25.
2c575bb9 — Ricardo Wurmus 9 years ago 
gnu: r-vegan: Update to 2.4-1.

* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-1.
84be3b99 — Marius Bakke 9 years ago 
gnu: Add mash.

* gnu/packages/bioinformatics.scm (mash): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
4b6da268 — Ben Woodcroft 9 years ago 
gnu: bamm: Update to 1.7.3.

* gnu/packages/bioinformatics.scm (bamm): Update to 1.7.3.
48409ef2 — Efraim Flashner 9 years ago 
gnu: infernal: Limit to i686 and x86_64 systems.

* gnu/packages/bioinformatics.scm (infernal)[supported-systems]: The
package requires VMX or SSE capability for parallel instructions, so
limit it to those supported systems.
35aa90a1 — Ricardo Wurmus 9 years ago 
gnu: Add Infernal.

* gnu/packages/bioinformatics.scm (infernal): New variable.
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