gnu: python-cheetah: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-cheetah):
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style.  Replace 'check phase replacement with
<#:test-backend, #:test-flags>.
<#:phases>: Merge phase 'fix-tests and former 'check phase replacement
in phase 'configure-tests.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: I4483c24303eaa5f4910fa724dad6e5099c0dcc40
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-csscompressor: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-csscompressor):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]: Drop them.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: I20a28f6f1f9dc2f81386c42e4271bfac40b3e509
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pefile: Update to 2024.8.26.

* gnu/packages/python-xyz.scm (python-pefile): Update to 2024.8.26.
[source]: Switch to git-fetch.
<snippet>: Remove encrypted test data.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: Ib8a1d990870179f52485df9558ae502a3592334d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-setproctitle: Update to 1.3.7.

* gnu/packages/python-xyz.scm (python-setproctitle): Update to 1.3.7.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Replace 'check phase replacement by a
'configure-tests phase.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: I4555b880da3faef7860fac999814bf2d052b0e05
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-graphql-relay: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-graphql-relay):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-poetry-core.
[description]: Improve style.

Change-Id: I41ac3412bf04646aeb3cabe0ec540b59985d2c0f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-odfpy: Update to 1.4.2.

* gnu/packages/python-xyz.scm (python-odfpy): Update to 1.4.2.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: I340d6ce07ba1667cd508a7f44558b337d9d144c4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-schematics: Update to 2.1.1.

* gnu/packages/python-xyz.scm (python-schematics): Update to 2.1.1.
[build-system]: Switch to pyproject-build-system.
[arguments]: Drop them.
[native-inputs]: Add python-dateutil, python-mock, python-pytest,
python-setuptools.
[description]: Improve it.

Change-Id: Ia77bfea19e991de1fea515c3a0c2b2193040f5bb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-consul: Deprecate in favor of python-py-consul.

* gnu/packages/python-xyz.scm
(python-consul): Deprecate in favor of python-py-consul.
(python-py-consul): Update to 1.6.0.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.
[propagated-inputs]: Remove python-six.
[home-page]: Update it.
[description]: Improve style.

Change-Id: I49bfb7552413e801fec231fd2b9c1ac7b11d6dc4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-labjack: Update to 2.1.0.

* gnu/packages/python-xyz.scm (python-labjack): Update to 2.1.0.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: I14c00f46e16d7282f3eff71fca164be2b3e5006c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pyserial-asyncio: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-pyserial-asyncio):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-backend>: Set it.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: I6ef81091ee58124764fa99be4118d91d06733270
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: sane-backends: Don't remove dll.conf.

* gnu/packages/scanner.scm (sane-backends): Keep 'dll.conf'

The file 'dll.conf' is required for sane to map device IDs to the appropriate
scanner backend.

Change-Id: I17a052fddf9c671e377236b8b24263f0b220bc98
Signed-off-by: Gabriel Wicki <gabriel@erlikon.ch>

gnu: pari-gp: Update to 2.17.3.

* gnu/packages/algebra.scm (pari-gp): Update to 2.17.3.

Change-Id: Icc5389aae978e22d36b8df19c594ff3e92f7d6e3

gnu: checkmake: Fix man page path.

* gnu/packages/check.scm (checkmake)[arguments]<#:phases>{install-man}:
Correct man page name and set its location to be in man1.

Fixes: guix/guix#3903
Change-Id: I640e52e6f11184d38480d1bb458ebecf80212f44
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: aflplusplus: Enable llvm_mode and afl-clang-lto.

* gnu/packages/debug.scm (aflplusplus)
[inputs]: Replace gcc-11 with gcc; add clang.
[native-inputs]: Replace gcc-11 with gcc.
[arguments]<make-flags>: Set CXX, LLVM_CONFIG, AFL_REAL_LD, CLANG_BIN,
CLANGPP_BIN, LLVM_LTO and AFL_CLANG_FLTO.
<phases>: Add fatal-llvm-failure and patch-clang-path.

Closes: guix/guix#3358
Change-Id: Ia306cc33b07186299c4310619a0b70bc42fea1be
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: Add font-mona-sans.

* gnu/packages/fonts.scm (font-mona-sans): New variable.

Closes: guix/guix#4394
Change-Id: I3e91ad79806220c694ed0ad5cddf77a550c41a36
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: Add font-hubot-sans.

* gnu/packages/fonts.scm (font-hubot-sans): New variable.

Closes: guix/guix#4407
Change-Id: I43e088555cc527a2a4f91783bc8efb7fe450a812
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: font-monaspace: Update to 1.301.

* gnu/packages/fonts.scm (font-monaspace): Update to 1.301.

Closes: guix/guix#4412
Change-Id: I27614eafc1fdef8f4e32f658778fbb80aec7273f
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: Remove htslib-1.14.

* gnu/packages/bioinformatics.scm (htslib-1.14): Delete variable.

Change-Id: Ic009b3ea5bd2b718461dc049df2f71e8e14f0864

gnu: Remove htslib-1.9.

* gnu/packages/bioinformatics.scm (htslib-1.9): Delete variable.

Change-Id: I4961b197f6357880e82a856ad3f661435eb980db

gnu: perl-bio-db-hts: Swap outdated input.

* gnu/packages/bioinformatics.scm (perl-bio-db-hts)[propagated-inputs]:
Replace htslib-1.9 by htslib.

Change-Id: I509e2ee9165d70c04753b467852fe40c805e6ea7