gnu: preseq: Update to 2.0. * gnu/packages/bioinformatics.scm (preseq): Update to 2.0. [source]: Add file-name field, remove patches. [arguments]: Remove unused build phases, add make flags. [inputs]: Add smithlab-cpp. * gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file. * gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove them.
gnu: Add smithlab-cpp. * gnu/packages/bioinformatics.scm (smithlab-cpp): New variable.
gnu: edirect: Update home page. * gnu/packages/bioinformatics.scm (edirect)[home-page]: Append trailing slash to home page.
gnu: sra-tools: Update to 2.5.4. * gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.4.
gnu: ncbi-vdb: Update to 2.5.4. * gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
gnu: ngs-java: Update to 1.2.2. * gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2. [arguments]: Remove build phase "fix-java-symlink-installation".
gnu: ngs-sdk: Update to 1.2.2. * gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.2.
gnu: Add ruby-net-ssh. * gnu/packages/ruby.scm (ruby-net-ssh): New variable.
gnu: Add ruby-mocha. * gnu/packages/ruby.scm (ruby-mocha): New variable.
gnu: Add ruby-redcarpet. * gnu/packages/ruby.scm (ruby-redcarpet): New variable.
gnu: Add ruby-introspection. * gnu/packages/ruby.scm (ruby-introspection): New variable.
gnu: Add ruby-instantiator. * gnu/packages/ruby.scm (ruby-instantiator): New variable.
gnu: Add ruby-blankslate. * gnu/packages/ruby.scm (ruby-blankslate): New variable.
gnu: Add ruby-metaclass. * gnu/packages/ruby.scm (ruby-metaclass): New variable.
gnu: Add ruby-test-unit. * gnu/packages/ruby.scm (ruby-test-unit): New variable.
gnu: Add ruby-packnga. * gnu/packages/ruby.scm (ruby-packnga): New variable.
gnu: Add ruby-gettext. * gnu/packages/ruby.scm (ruby-gettext): New variable.
gnu: Add ruby-text. * gnu/packages/ruby.scm (ruby-text): New variable.
gnu: Add ruby-locale. * gnu/packages/ruby.scm (ruby-locale): New variable.
gnu: Add ruby-power-assert. * gnu/packages/ruby.scm (ruby-power-assert): New variable.