gnu: python-tables: Update to 3.10.2.

* gnu/packages/python-xyz.scm (python-tables): Update to 3.10.2.
[build-system]: Switch to pyproject-build-system.
[phases]{set-LD_LIBRARY_PATH}: Replace by {pre-build} with setting up
environment variables for each library path which is available in
setup.py.  Regenerate C code with Cython before build.
{pre-check}: New phase.
{check}: Rework test invocation to run just bare minimal test suite, add
a notes popping up during tests invocation describing it.
[native-inputs]: Add python-pytest, python-setuptools-next, and
python-sphinx.
[inputs]: Remove hdf5-1.10, and zlib; add bzip2, and hdf5.

Fixes: guix/guix#2342.
Change-Id: Ia1d00979123e459640d74a0dfd7fd52b25f8b9b7

gnu: Add font-google-noto-serif-cjk-static.

* gnu/packages/fonts.scm (font-google-noto-serif-cjk-static): New variable.

Change-Id: Ic0dd54716c9b252e1e87afaab07039021f3f6511
Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>

gnu: texlive-texinfo: Update to 2025.2.75617.

* gnu/packages/tex.scm (texlive-texinfo): Update to 2025.2.75617.

Change-Id: I2a35d207a3b4b435f42dfbfa56a9cd154f12c249

gnu: verilator: Update to 5.040.

* gnu/packages/fpga.scm (verilator): Update to 5.040.
[native-inputs]: Sort.
[#:phases] {set-SYSTEMC_ROOT}: New phase.

Change-Id: Ib7460a1ca99fa6d2f48b866ef8c704e0c17c132b
Signed-off-by: Maxim Cournoyer <maxim@guixotic.coop>
Modified-by: Maxim Cournoyer <maxim@guixotic.coop>

gnu: mate: Add mate-notification-daemon.

* gnu/packages/mate.scm (mate)[propagated-inputs]: Add
mate-notification-daemon.

Closes: #2454
Change-Id: Ia1a3209d1a37f1e77b779511fc28fdeb9347d9ff
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: Add mate-notification-daemon.

* gnu/packages/mate.scm (mate-notification-daemon): New variable.

Change-Id: Ieaf3e14a22e71a9ecdab8825c7f301dac5ec7314
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: cutter: Update to 2.4.1; also update rizin to 0.8.1.

* gnu/packages/engineering.scm (rizin): Update to 0.8.1.
<#:phases>{skip-integration-tests}: Activate bin_mach0 tests and
deactivate tokens test.
(cutter): Update to 2.4.1.
[inputs]: Add graphviz.
[arguments]<#:configure-flags>: Set CUTTER_QT=5 and
CUTTER_ENABLE_PYTHON_BINDINGS=ON.

Closes: #2526
Change-Id: Ibb2193dd03b9c8eb317480bffa67846ef3556fe7
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: pythonscad: Update to 0.0.0-4-228aa7b.

 * gnu/packages/engineering.scm (pythonscad): Update to 0.0.0-4-228aa7b.

Change-Id: I3dbcb8d02f32de73708eee0778950e1946a36759
Signed-off-by: Maxim Cournoyer <maxim@guixotic.coop>

gnu: openscad: Update to 2025.09.02-0-5d6e37d.

 * gnu/packages/engineering.scm (openscad): Update to 2025.09.02-0-5d6e37d.

Change-Id: I4f267c2d83fa519be913f66972193a945f2e9497
Signed-off-by: Maxim Cournoyer <maxim@guixotic.coop>

gnu: manifold: Update to 3.2.1.

 * gnu/packages/engineering.scm (manifold): Update to 3.2.1.

Change-Id: I0ce27215693c767acd6d70a5d61fdf8a48549259
Signed-off-by: Maxim Cournoyer <maxim@guixotic.coop>

services: network-manager: Create /etc/ipsec.secrets directory in activation.

* gnu/services/networking.scm (network-manager-activation): Create the
/etc/ipsec.secrets directory.

Change-Id: Ib347cc00e7cbd314b2a465b5ee681285ba0d3115
Signed-off-by: Maxim Cournoyer <maxim@guixotic.coop>
Modified-by: Maxim Cournoyer <maxim@guixotic.coop>

gnu: Add network-manager-l2tp.

* gnu/packages/gnome.scm (network-manager-l2tp): New variable.

Change-Id: I90a45795e702fe04c64e02331de02104f083582c
Signed-off-by: Maxim Cournoyer <maxim@guixotic.coop>

gnu: celestia-gtk: Deprecate in favor of celestia.

Celestia has been migrated to Qt6 in the latest commits on master
branch, this is a preparation for upcoming upgrade. GTK variant is not
recommended to use by upstream.

See: <https://github.com/CelestiaProject/Celestia/issues/2148>.

* gnu/packages/astronomy.scm (celestia-gtk): Deprecate variable.

Fixes: guix/guix#2338.
Change-Id: I925b74ba658097e3d09da915f46f1c585ccd7f83

gnu: frei0r-plugins: Update source URL.

* gnu/packages/video.scm (frei0r-plugins):
[source]: Update URL.

Fixes: guix/guix#1440.
Reported-by: Mazin AlHaddad <codeberg@getstate.dev>
Change-Id: I16e28031e8ab8684f5b4571b0a9dd0947fe01c50
Reviewed-by: Simon Tournier <zimon.toutoune@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add kissfft.

* gnu/packages/algebra.scm (kissfft): New variable.

Change-Id: If2bae57f93830bec003a556028a85e28d2e0c961
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: stargate: Enable Wayland support.

* gnu/packages/music.scm (stargate)[arguments]<#:phases>: In 'wrap-program
phase, add QT_PLUGIN_PATH.
[inputs]: Add qtwayland.

Change-Id: Ieab22d6181b578bad0c05132567148c05afa4d00

gnu: stargate: Add python-distro to inputs.

* gnu/packages/music.scm (stargate)[inputs]: Add python-distro.

Change-Id: I5558767835fd9a5d9fbe0742f9c6c22b033941f0

gnu: stargate: Fix locating portmidi.

* gnu/packages/music.scm (stargate)[inputs]: Replace portmidi with
portmidi-2.
[arguments]<#:phases>: Replace patch-portaudio-path with
patch-portaudio-and-portmidi-paths.

Change-Id: Icd5dbe154d2f8cdb9a18006b03ce74ea73d328d4

gnu: Remove simdjson-0.6.

* gnu/packages/cpp.scm (simdjson-0.6): Delete variable.

Fixes: guix/guix#1841
Change-Id: Ice812aeb31b212bf4e1d6c0afcb92c647bbd879f

gnu: Remove fulcrum.

* gnu/packages/finance.scm (fulcrum): Delete variable.

Change-Id: I0e1b7d6dfdbe84a2e9f7d79835abc246667259b5