gnu: Remove python-pytest-capturelog.

This package is deprecated for 8 years !! Its core functionality is
already in pytest itself.

* gnu/packages/check.scm (python-pytest-capturelog): Delete variable.

Change-Id: I7678551de1d17eb3783d9a2a4e25b86801773db5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: osc: Switch to pyproject.

* gnu/packages/build-tools.scm (osc):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:tests>: Disable them with comment.
<#:phases>: Rewrite phase 'fix-filename.
[native-inputs]: Add python-setuptools, python-wheel.
[description]: Run guix style.

Change-Id: I1db8679885d5a5551059ab6f2c6e30b84cd0c19d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: compiledb: Switch to pyproject.

* gnu/packages/build-tools.scm (compiledb):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Improve style, add substitution to fix tests.
[native-inputs]: Add python-pytest, python-setuptools, python-wheel.

Change-Id: Iaafbd32f7e7622ea95dcff9944cdccee600d80cd
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: nanosv: Switch to pyproject.

* gnu/packages/bioinformatics.scm (nanosv):
[source, description]: Run guix style.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:tests?>: Disable them.
<#:phases>: Add phase 'relax-requirements.
[native-inputs]: Add python-setuptools, python-wheel.

Change-Id: If63f2534ae9b0e7cc34c4e5d59fb0947fcbe5d45
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: vpn-slice: Switch to pyproject.

* gnu/packages/vpn.scm (vpn-slice):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style, rewrite using gexps.
<#:tests>: Disable them explicitely.
[native-inputs]: Add python-setuptools, python-wheel.

Change-Id: I705f23279b8fb8dfa8405635f026d3aa85183226
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: sshoot: Switch to pyproject.

* gnu/packages/vpn.scm (sshoot):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]: Rewrite using gexps and search-input-file.
[native-inputs]: Add python-setuptools, python-wheel.
[inputs, description]: Run guix style.

Change-Id: I3cff24a71cb90b8ffa39aafd0a5586428a92f4fa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-mysqlclient: Update to 2.2.7.

* gnu/packages/databases.scm (python-mysqlclient): Upgrade to 2.2.7.

Change-Id: Ifa5a8f7c478a6823fd957b2788e9b52457c5713d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: packages/ipfs: Sort.

* gnu/packages/ipfs.scm: (go-github-com-ipfs-go-cid,
go-github-com-ipfs-go-cidutil, go-github-com-ipfs-go-ipld-format, and
go-github-com-ipfs-go-metrics-interface): Sort variables alphabetically.

Change-Id: Iafeb67f7fdcf43af8fcbe9334eeb1d1e0570e29b

gnu: openconnect-sso: Swap poetry with poetry-core.

* gnu/packages/vpn.scm (openconnect-sso): Update to 0.8.0.
[arguments] <phases>: Add 'use-poetry-core.
[inputs]: Remove poetry.
[native-inputs]: Add python-poetry-core.

Change-Id: Ia69cb9d24cd3368a966297cfcdbafc655ab9f8ef

gnu: vembrane: Update to 1.0.7.

* gnu/packages/bioinformatics.scm (vembrane): Update to 1.0.7.
[arguments] <phases>: Remove 'relax-requirements; add 'use-poetry-core.
[native-inputs]: Remove poetry; add python-poetry-core.

Change-Id: I50aca480b3aded3714d6e999efd3d12a4513e6a3

gnu: aerich: Update to 0.8.1.

* gnu/packages/databases.scm (aerich): Update to 0.8.1.
[propagated-inputs]: Remove python-click, python-ddlparse, and
python-tomlkit; add python-asyncclick, python-pydantic, and
python-tomli-w.
[native-inputs]: Remove poetry, python-bandit, python-isort,
python-pydantic, and python-pytest-xdist; add python-poetry-core.

Change-Id: I685b79fdb6b1070ce86161d9f36064b84f4fe713

gnu: Add python-asyncclick.

* gnu/packages/python-xyz.scm (python-asyncclick): New variable.

Change-Id: I420c61daef88abfd2409c6eab3bf28e864069777

gnu: Add python-faster-whisper.

* gnu/packages/machine-learning.scm (python-faster-whisper): New variable.

gnu: Add onnxruntime.

* gnu/packages/machine-learning.scm (onnxruntime): New variable.

gnu: Add flatbuffers-23.5.

* gnu/packages/serialization.scm (flatbuffers-23.5): New variable.

gnu: safeint: Update to 3.0.28.

* gnu/packages/cpp.scm (safeint): Update to 3.0.28.

gnu: safeint: Improve style.

* gnu/packages/cpp.scm (safeint): Run guix style.

gnu: Add eigen-for-onnxruntime.

* gnu/packages/algebra.scm (eigen-for-onnxruntime): New variable.

gnu: debian-archive-keyring: Update to 2025.01.

* gnu/packages/debian.scm (debian-archive-keyring): Update to 2025.01.
[tests]: Disable tests, removed upstream.

Change-Id: I584988ebc3e2ab5ef6193fa57c4dfdb762c5b0e5

gnu: debootstrap: Update to 1.0.141.

* gnu/packages/debian.scm (debootstrap): Update to 1.0.141.
[inputs]: Add elxr-archive-keyring.

Signed-off-by: Vagrant Cascadian <vagrant@debian.org>