~ruther/guix-local

ref: a0bcaefd0885fdca898c3e60dc22c00a581c9b30 guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 48.4 KiB
8214b7fb — Ricardo Wurmus 11 years ago 
gnu: rseqc: Update hash.

* gnu/packages/bioinformatics.scm (rseqc): Update hash.
5854f685 — Ricardo Wurmus 11 years ago 
gnu: Add GRIT.

* gnu/packages/bioinformatics.scm (grit): New variable.
c833ab55 — Ricardo Wurmus 11 years ago 
gnu: Add Shogun.

* gnu/packages/bioinformatics.scm (shogun): New variable.
bfe3c685 — Ricardo Wurmus 11 years ago 
gnu: Add clustal omega.

* gnu/packages/bioinformatics.scm (clustal-omega): New variable.
c5372108 — Ricardo Wurmus 11 years ago 
gnu: pbtranscript-tofu: Add missing inputs.

* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[inputs]: Add missing
  runtime inputs.
49261e45 — Ricardo Wurmus 11 years ago 
gnu: pbtranscript-tofu: Delete pre-built libraries.

* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[arguments]: Delete
  "build" directory and any shared objects after unpacking.
de07c0db — Ricardo Wurmus 11 years ago 
gnu: Add vcftools.

* gnu/packages/bioinformatics.scm (vcftools): New variable.
8e913213 — Ricardo Wurmus 11 years ago 
gnu: Add cutadapt.

* gnu/packages/bioinformatics.scm (cutadapt): New variable.
2c16316e — Ricardo Wurmus 11 years ago 
gnu: Add pbtranscript-tofu.

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): New variable.
ad641d53 — Ricardo Wurmus 11 years ago 
gnu: Add python2-bx-python.

* gnu/packages/bioinformatics.scm (python2-bx-python): New variable.
19ee9201 — Ricardo Wurmus 11 years ago 
gnu: Add python2-pbcore.

* gnu/packages/bioinformatics.scm (python2-pbcore): New variable.
ddd82e0e — Ricardo Wurmus 11 years ago 
gnu: Add MISO.

* gnu/packages/bioinformatics.scm (miso): New variable.
9a8336d8 — Ricardo Wurmus 11 years ago 
gnu: Add bwa.

* gnu/packages/bioinformatics.scm (bwa): New variable.
15a3c3d4 — Ricardo Wurmus 11 years ago 
gnu: Add htsjdk.

* gnu/packages/bioinformatics.scm (htsjdk): New variable.
12890625 — Ludovic Courtès 11 years ago 
Merge branch 'core-updates'.
191c7101 — Ricardo Wurmus 11 years ago 
gnu: Add crossmap.

* gnu/packages/bioinformatics.scm (crossmap): New variable.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
810cff85 — Ricardo Wurmus 11 years ago 
gnu: Add CLIPper.

* gnu/packages/bioinformatics.scm (clipper): New variable.
d57e6d0f — Ricardo Wurmus 11 years ago 
gnu: Add MACS.

* gnu/packages/bioinformatics.scm (macs): New variable.
a2fb1492 — Ricardo Wurmus 11 years ago 
gnu: Add pybedtools.

* gnu/packages/bioinformatics.scm (python2-pybedtools): New variable.
f586c877 — Mark H Weaver 11 years ago 
gnu: Add 'file-name' fields for github source tarballs without a name.

* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
  gnu/packages/audio.scm (jack-2, lvtk),
  gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
  gnu/packages/game-development.scm (tiled),
  gnu/packages/games.scm (minetest-data, minetest, retroarch),
  gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
  gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
  gnu/packages/mail.scm (offlineimap, libetpan),
  gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
  gnu/packages/nutrition.scm (gourmet),
  gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
  gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
  'file-name' field to origin.
Next