gnu: poppler: Fix CVE-2015-8868.

* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
* gnu/packages/patches/poppler-CVE-2015-8868.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

gnu: ncmpcpp: Remove bootstrapping phase.

* gnu/packages/mpd.scm (ncmpcpp)[arguments]: Remove 'autogen' phase.
[native-inputs]: Remove autoconf, automake, and libtool.

gnu: Add muscle.

* gnu/packages/bioinformatics.scm (muscle): New variable.

gnu: subversion: Update to 1.8.16 [fixes CVE-2016-{2167,2168}].

* gnu/packages/version-control.scm (subversion): Update to 1.8.16.

gnu: Add uhttpmock.

* gnu/packages/web.scm (uhttpmock): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: ruby-hashery: Disable failing test.

* gnu/packages/ruby.scm (ruby-hashery)[arguments]: Remove failing
test.

gnu: ruby: Update to 2.3.1.

* gnu/packages/ruby.scm (ruby): Update to 2.3.1.
[origin] Add symlink patch.
* gnu/packages/patches/ruby-symlinkfix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.

gnu: Add Fossil.

* gnu/packages/version-control.scm (fossil): New variable.
* gnu/packages/patches/fossil-test-fixes.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

gnu: eigen: Update to 3.2.8.

* gnu/packages/algebra.scm (eigen): Update to 3.2.8.

gnu: Add hplip.

* gnu/packages/cups.scm (hplip): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>

gnu: giac-xcas: Update to 1.2.2-41.

* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-41.
[inputs]: Add libxinerama.

Signed-off-by: Leo Famulari <leo@famulari.name>

gnu: webkitgtk: Update to 2.12.2.

* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.2.

gnu: python-celery: Rearrange inputs.

* gnu/packages/python.scm (python-celery)[propagated-inputs]: Move
python-pytz, python-billiard, python-kombu ...
[inputs]: ... to here. Add python-amqp, python-anyjson.

gnu: python-rauth: Rearrange inputs.

* gnu/packages/python.scm (python-rauth)[native-inputs]: Remove it.
[propagated-inputs]: Move python-requests ...
[inputs]: ... to here.
[properties]: Define python2-variant.
(python2-rauth): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.

gnu: libtasn1: Replace 4.7 with 4.8 [fixes CVE-2016-4008].

* gnu/packages/tls.scm (libtasn1)[replacement]: New field.
(libtasn1/fixed): New variable.

gnu: Add Red Eclipse.

* gnu/packages/games.scm (redeclipse): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>

gnu: magit: Update to 2.6.2.

* gnu/packages/emacs.scm (magit): Update to 2.6.2.

gnu: icecat: Add fixes for CVE-2016-{2805,2807,2808,2814} etc.

* gnu/packages/patches/icecat-CVE-2016-2805.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt1.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt2.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt3.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt4.patch,
gnu/packages/patches/icecat-CVE-2016-2807-pt5.patch,
gnu/packages/patches/icecat-CVE-2016-2808.patch,
gnu/packages/patches/icecat-CVE-2016-2814.patch,
gnu/packages/patches/icecat-update-bundled-graphite2: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.

icecat fixup

gnu: nss: Update to 3.23.

* gnu/packages/gnuzilla.scm (nss): Update to 3.23.
[arguments]: In the 'install' phase, remove libgtest1.so from the
output.

gnu: nspr: Update to 4.12.

* gnu/packages/gnuzilla.scm (nspr): Update to 4.12.