~ruther/guix-local

ref: 899121f4d6ee596df522e4e7e729e07fa6ae84d6 guix-local/gnu d---------
899121f4 — Ricardo Wurmus 4 years ago 
gnu: phylip: Update to 3.697.

* gnu/packages/bioinformatics.scm (phylip): Update to 3.697.
e86fe980 — Ricardo Wurmus 4 years ago 
gnu: phylip: Pass -fcommon to compiler.

* gnu/packages/bioinformatics.scm (phylip)[arguments]: Set CFLAGS.
125fdc3b — Ricardo Wurmus 4 years ago 
gnu: phylip: Remove trailing #T.

* gnu/packages/bioinformatics.scm (phylip)[arguments]: Remove trailing #T from
build phases.
4561ca7f — Ricardo Wurmus 4 years ago 
gnu: subread: Remove trailing #T.

* gnu/packages/bioinformatics.scm (subread)[arguments]: Remove trailing #T
from build phases.
96b2be83 — Ricardo Wurmus 4 years ago 
gnu: subread: Update to 2.0.3.

* gnu/packages/bioinformatics.scm (subread): Update to 2.0.3.
9a03587b — Ricardo Wurmus 4 years ago 
gnu: subread: Update home page..

* gnu/packages/bioinformatics.scm (subread)[home-page]: Use new home page.
aa25c9b1 — Ricardo Wurmus 4 years ago 
gnu: subread: Pass -fcommon to compiler.

* gnu/packages/bioinformatics.scm (subread)[arguments]: Add -fcommon to flags.
417299f0 — Ricardo Wurmus 4 years ago 
gnu: python-pytest-console-scripts: Update to 1.2.1.

* gnu/packages/python-check.scm (python-pytest-console-scripts): Update to
1.2.1.
6874994f — Ricardo Wurmus 4 years ago 
gnu: Add python-pytest-rerunfailures.

* gnu/packages/python-check.scm (python-pytest-rerunfailures): New variable.
c25a6d39 — Ricardo Wurmus 4 years ago 
gnu: mcl: Add -fcommon to compiler flags.

* gnu/packages/machine-learning.scm (mcl)[arguments]: Set CFLAGS.
b2140341 — Ricardo Wurmus 4 years ago 
gnu: python-cytoolz: Update to 0.11.2.

* gnu/packages/python-xyz.scm (python-cytoolz): Update to 0.11.2.
[source]: Add snippet.
06fca019 — Ricardo Wurmus 4 years ago 
gnu: hisat: Update to 0.1.6.

* gnu/packages/bioinformatics.scm (hisat): Update to 0.1.6.
2f7287b3 — Ricardo Wurmus 4 years ago 
gnu: hisat: Remove trailing #T.

* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove trailing #T from
build phase.
9dc727f8 — Ricardo Wurmus 4 years ago 
gnu: hisat: Remove invalid characters.

* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove curly quotes.
478e3e71 — Ricardo Wurmus 4 years ago 
gnu: crossmap: Update to 0.6.1.

* gnu/packages/bioinformatics.scm (crossmap): Update to 0.6.1.
[source]: Add snippet to remove generated files.
b5c9afb7 — Ricardo Wurmus 4 years ago 
gnu: Remove python2-bx-python.

* gnu/packages/bioinformatics.scm (python2-bx-python): Delete variable.
699b443c — Ricardo Wurmus 4 years ago 
gnu: python-bx-python: Update to 0.8.12.

* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.8.12.
[propagated-inputs]: Remove python-six.
[arguments]: Remove.  Tests are still not run, though.
4b4ab4ce — Ricardo Wurmus 4 years ago 
gnu: Remove pbtranscript-tofu.

Upstream has disappeared and it depends on Python 2, which is no longer
supported.

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove variable.
b452d7c2 — Ricardo Wurmus 4 years ago 
gnu: python-pyfit-sne: Update to 1.2.1.

* gnu/packages/bioinformatics.scm (python-pyfit-sne): Update to 1.2.1.
[arguments]: Disable tests explicitly.
4afacd45 — Pierre Langlois 4 years ago 
gnu: helm: Fix build with GCC 9 and later.

* gnu/packages/music.scm (helm)[origin]: Add patch.
* gnu/packages/patches/helm-fix-gcc-9-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
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