~ruther/guix-local

ref: 87e91a9fffd47ee32cc2aa02f0117fe9cedfb05d guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 435.2 KiB
87e91a9f — Ricardo Wurmus 8 years ago 
gnu: r-msnid: Update to 1.12.1.

* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
43949265 — Ricardo Wurmus 8 years ago 
gnu: r-maldiquant: Update to 1.17.

* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
06e8e0fc — Ricardo Wurmus 8 years ago 
gnu: r-genomicalignments: Update to 1.14.1.

* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
1ce5d32b — Ricardo Wurmus 8 years ago 
gnu: r-limma: Update to 3.34.2.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
8131cf41 — Ricardo Wurmus 8 years ago 
gnu: r-variantannotation: Update to 1.24.2.

* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
d2081a17 — Ricardo Wurmus 8 years ago 
gnu: r-getopt: Update to 1.20.1.

* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
4220ab0c — Ricardo Wurmus 8 years ago 
gnu: r-gseabase: Update to 1.40.1.

* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
d259932c — Ricardo Wurmus 8 years ago 
gnu: r-dexseq: Update to 1.24.1.

* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
058644c0 — Ricardo Wurmus 8 years ago 
gnu: r-deseq2: Update to 1.18.1.

* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
654c29ac — Ricardo Wurmus 8 years ago 
gnu: r-annotate: Update to 1.56.1.

* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
9364a520 — Arun Isaac 8 years ago 
gnu: metabat: Use scons-build-system.

* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
1fd904fb — Roel Janssen 8 years ago 
gnu: Update r-mutationalpatterns to 1.4.1.

* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.1.
efa6a1dd — Roel Janssen 8 years ago 
gnu: Add r-copynumber.

* gnu/packages/bioinformatics.scm (r-copynumber): New variable.
d7f24778 — Ricardo Wurmus 8 years ago 
gnu: Add java-picard-1.113.

* gnu/packages/bioinformatics.scm (java-picard-1.113): New variable.
d7fed31a — Ricardo Wurmus 8 years ago 
gnu: Add java-picard.

* gnu/packages/bioinformatics.scm (java-picard): New variable.
bd94b6f8 — Ricardo Wurmus 8 years ago 
gnu: java-htsjdk: Update to 2.3.0.

* gnu/packages/bioinformatics.scm (java-htsjdk): Update to 2.3.0.
[arguments]: Build with JDK 8.
[inputs]: Add java-ngs, java-snappy, java-commons-compress,
java-commons-logging-minimal, java-commons-jexl-2, and java-xz.
[native-inputs]: Add java-testng.
35e78aaa — Ricardo Wurmus 8 years ago 
gnu: r-rhdf5: Fix build phase.

* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Fix "unpack-smallhdf5"
phase.
e6debcaf — Ricardo Wurmus 8 years ago 
gnu: subread: Update to 1.6.0.

* gnu/packages/bioinformatics.scm (subread): Update to 1.6.0.
aa33cc29 — Ricardo Wurmus 8 years ago 
gnu: idr: Update to 2.0.3.

* gnu/packages/bioinformatics.scm (idr): Update to 2.0.3.
[source]: Add snippet to remove generated code.
40590caf — Ricardo Wurmus 8 years ago 
gnu: idr: Correct license.

* gnu/packages/bioinformatics.scm (idr)[license]: Change to GPLv2+.
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