gnu: python-numpy: Fix build.

* gnu/packages/python-xyz.scm (python-numpy):
  [native-inputs]: Replace python-setuptools and python-wheel with
  maximum supported versions python-setuptools-67 and python-wheel-0.40.

Change-Id: Idf04968a0426442f53751d85906dc319a6f25a11

gnu: python-smmap: Update to 5.0.2.

* gnu/packages/python-xyz.scm (python-smmap): Update to 5.0.2.
  [build-system]: Use pyproject.
  [native-inputs]: Remove python-nosexcover; add python-pytest,
  python-setuptools, and python-wheel.

Change-Id: Ia6031ed5774c3c3d8db5dd18cd158758236479d4

gnu: python-docutils: Update to 0.21.2.

This change updates python-docutils to the latests version and pins some
older packages on 0.19 to resolve build documentation issue which uses
rst2man.

* gnu/packages/python-xyz.scm (python-docutils): Update to 0.21.2.
[build-system]: Use pyproject.
[arguments] <phases>: Do not overwrite 'check use {#:test-backend} and
{#:test-flags}.
[native-inputs]: Add python-flit-core.

(python-docutils-0.16)[native-inputs]: Add python-wheel.

(python-docutils-0.19): New variable.

* gnu/packages/diffoscope.scm (trydiffoscope) [native-inputs]: Remove
python-docutils; add python-docutils-0.19.
* gnu/packages/gtk.scm (gtk): Likewise.
* gnu/packages/linux.scm (rdma-core): Likewise.
* gnu/packages/power.scm (apcupsd): Likewise.
* gnu/packages/version-control.scm (cgit): Likewise.
* gnu/packages/virtualization.scm (ganeti)) Likewise.

Change-Id: If58b9b12732347245e66e3c2cb5e67b0a8450913

gnu: python-types-setuptools: Update to 80.9.0.20250529.

* gnu/packages/python-xyz.scm (python-types-setuptools): Update to 80.9.0.20250529.
  [build-system]: Use pyproject.
  [native-inputs]: Add python-setuptools.

Change-Id: I02409d88db355068f57c11cf85a70cd5e23a8602

gnu: python-psutil: Update to 7.0.0.

* gnu/packages/python-xyz.scm (python-psutil): Update to 7.0.0.
  [build-system]: Use pyproject.
  [native-inputs]: Add python-setuptools.

Change-Id: If14a03a99a4b219af6ecb7bbad176a6757cb81b4

gnu: python-mako: Update to 1.3.10.

* gnu/packages/python-xyz.scm (python-mako): Update to 1.3.10.
  [buid-system]: Use pyproject.
  [arguments] <phases>: Use default 'check.
  [native-inputs]: Remove python-mock; add python-setuptools and
  python-wheel.

Change-Id: I3bf921cd52ee4671ab34820fe1a35b34db226251

gnu: python-ply: Switch to pyproject-build-system.

* gnu/packages/python-xyz.scm (python-ply):
  [build-system]: Use pyproject.
  [arguments] <tests?>: Visually disable them as PyPI archive provides
  no tests, where Git source contains.
  [native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I99b04238b4ec4421d6d7acae47edb915826d9c94

gnu: python-pretend: Switch to pyproject-build-system.

* gnu/packages/python-xyz.scm (python-pretend):
  [source]: Switch to git-fetch containing tests.
  [build-system]: Use pyproject.
  [native-inputs]: Add python-pytest and python-setuptools.

Change-Id: I339b7c2463c41e5f1017c9d71857c593f6211d5b

gnu: python-markupsafe: Update to 3.0.2.

* gnu/packages/python-xyz.scm (python-markupsafe): Update to 3.0.2.
[source]: Update project name (it is lowercase now).
[build-system]: Use pyproject-build-system.
[arguments]: Run pytest with default verbosity provided by the build
system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I76b03fd0c28bbfdd2e5f2260fd34cba0f39d08d9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pyyaml: Update to 6.0.2.

* gnu/packages/python-xyz.scm (python-pyyaml): Update to 6.0.2.
  [build-system]: Use  pyproject.
  [native-inputs]: Add python-cython3, python-seuptools, python-pytest,
  and python-wheel.

Change-Id: Ic3d5cdc75650644831ad7192bc17427f9881f2e4

gnu: python-six: Do not inherit.

python-six-bootstrap is no longer required, this change removes it and
refactor python-six as a stand alone package.

* gnu/packages/python-build.scm (python-six-bootstrap): Remove variable.
* gnu/packages/python-xyz.scm (python-six): Do not inherit, re-use
package definition from python-six-bootstrap.
(python2-six) [native-inputs]: Add python-setuptools, and python-wheel.

Change-Id: Ia4abf667e0a2df65c171b3c8f5808d8e6d597b17

gnu: python-cython-0: Update to 0.29.37.

* gnu/packages/python-xyz.scm (python-cython-0): Update to 0.29.37.
  Use G-expressions.
  [build-system]: Inherit pyproject form python-cython.
  [arguments] <test-backend>: Use 'custom; <test-flags>: Utilize it
  instead of overwriting 'check phase.
  <phases>: Add 'pre-check; use default 'check.
  [inputs]: Inherit from python-cython.
  [native-inputs]: Likewise.
  [home-page]: Likewise.
  [synopsis]: Likewise.
  [description]: Likewise.

Change-Id: I97e8662f0a53aa9bc702b835a347900c7ebd5ea1

gnu: python-cython: Fix tests on i686-linux.

* gnu/packages/python-xyz.scm (python-cython):
  [arguments] <test-backend>: Use 'custom.
  <test-flags>: Skip one test on i686-linux.
  <phases>: Use default 'check; add 'pre-check.

Change-Id: Ia2aa75cf341f9db043c2c2bc99ed56ef6816ca21

gnu: python-cython: Build with gcc@14.

* gnu/packages/python-xyz.scm (python-cython):
  [native-inputs]: Remove (cond ((target-x86-32?) gcc-11) (else gcc-13)).

Change-Id: I04ff6694a147d73beda119231d5a79579cf01c82

gnu: python-cython: Set default to v3.

* gnu/packages/python-xyz.scm (python-cython): Overwrite with
python-cython-3 and making it a default.
(python-cython-0): New variable, copy of python-cython@0.23.32.
(python-cython-3): Set to python-cython.

Change-Id: I6af9caeb77cd0be352b814baae7e37c2eafb00e7

gnu: python-cython-3: Update to 3.1.2.

* gnu/packages/python-xyz.scm (python-cython-3): Update to 3.1.2.

Change-Id: I0cfe7d6bfdc2df37fd9309ae39c09674f616dee2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-sortedcontainers: Switch to pyproject, enable tests.

* gnu/packages/python-xyz.scm (python-sortedcontainers):
  [source]: Switch to git-fetch containing tests.
  [build-system]: Use pyproject.
  [arguments] <tests?>: Now enable them.
  [native-inputs]: Add python-pytest-bootstrap and python-setuptools.

Change-Id: Ibce0dd93d964853e734424e029f9197e67f1f828

gnu: python-iniconfig: Update to 2.1.0.

* gnu/packages/python-xyz.scm (python-iniconfig): Update to 2.1.0.
  [build-system]: Use pyproject.
  [arguments] <test?>: Visually disable them as PyPI does not provide
  tests and tests introduce cycle with Pytest.
  [native-inputs]: Add python-hatch-vcs, python-hatchling.

Change-Id: I20f3bc55fbd94aa2c79ce77e35f1a62aacd4af14

gnu: Add python-pygments-bootstrap.

* gnu/packages/python-xyz.scm (python-pygments-bootstrap): New variable.

Change-Id: Icf982bbaa641b77afebafdd14a4c063012b2fdc0

gnu: python-pygments: Update to 2.19.1.

* gnu/packages/python-xyz.scm (python-pygments): Update to 2.19.1.
  [source]: Fix PyPI package name; with capital P, the download doesn't
  work.
  [arguments] <test-flags>: Ignore just some problematic tests; drop
  "--ignore-glob" option.
  [native-inputs]: Add python-hatchling; replace python-pytest by
  python-pytest-bootstrap; remove python-setuptools and python-wheel.

Change-Id: I85bf3cb2a8c4a996586e820bd582dea777ef930d
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>