~ruther/guix-local

ref: 7610c3ca5540a7d0946e15a765b35f8bf068316e guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 350.4 KiB
2f3108ad — Petter 9 years ago 
gnu: Avoid circular dependencies by Perl license.

* guix/licenses.scm (perl-license): New variable.
* gnu/packages/bioinformatics.scm: Change (package-license perl) to perl-license.
* gnu/packages/compression.scm: Same.
* gnu/packages/databases.scm: Same.
* gnu/packages/gd.scm: Same.
* gnu/packages/language.scm: Same.
* gnu/packages/libevent.scm: Same.
* gnu/packages/mail.scm: Same.
* gnu/packages/messaging.scm: Same.
* gnu/packages/ncurses.scm: Same.
* gnu/packages/networking.scm: Same.
* gnu/packages/photo.scm: Same.
* gnu/packages/tcl.scm: Same.
* gnu/packages/tex.scm: Same.
* gnu/packages/tls.scm: Same.
* gnu/packages/web.scm: Same.
* gnu/packages/wm.scm: Same.
* gnu/packages/xml.scm: Same.
* gnu/packages/xorg.scm: Same.
* gnu/packages/zip.scm: Same.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
f4322542 — Roel Janssen 9 years ago 
gnu: vcftools: Update to 0.1.15.

* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.15.
90f83099 — Efraim Flashner 9 years ago 
gnu: r-genomeinfodbdata: Fix source url.

* gnu/packages/bioinformatics.scm (r-genomeinfodbdata)[source]: Use
source uri and not bioconductor-uri shortener.
524bfe2d — Roel Janssen 9 years ago 
gnu: r-msnid: Update to 1.10.0.

* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0.
82359c72 — Roel Janssen 9 years ago 
gnu: r-msnbase: Update to 2.2.0.

* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0.
5bfa6e09 — Roel Janssen 9 years ago 
gnu: r-pcamethods: Update to 1.68.0.

* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0.
63bf2102 — Roel Janssen 9 years ago 
gnu: r-mzid: Update to 1.14.0.

* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0.
60c08b2f — Roel Janssen 9 years ago 
gnu: r-vsn: Update to 3.44.0.

* gnu/packages/bioinformatics.scm (r-vsn):
[source]: Update to 3.44.0,
[propagated-inputs]: Add r-hexbin.
bd3cc4cc — Roel Janssen 9 years ago 
gnu: r-affy: Update to 1.54.0.

* gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0.
71abcc4c — Roel Janssen 9 years ago 
gnu: r-affyio: Update to 1.46.0.

* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0.
e440ad6d — Roel Janssen 9 years ago 
gnu: r-mzr: Update to 2.10.0.

* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0.
5b1337cc — Roel Janssen 9 years ago 
gnu: r-protgenerics: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0.
1d09d017 — Roel Janssen 9 years ago 
gnu: r-sva: Update to 3.24.0.

* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0.
d52d2d62 — Roel Janssen 9 years ago 
gnu: r-copywriter: Update to 2.8.0.

* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0.
7d72f2a8 — Roel Janssen 9 years ago 
gnu: r-chipseq: Update to 1.26.0.

* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0.
04049a5f — Roel Janssen 9 years ago 
gnu: r-rhdf5: Update to 2.20.0.

* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0.
ff58a1af — Roel Janssen 9 years ago 
gnu: r-tximport: Update to 1.4.0.

* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0.
cf4ac4e4 — Roel Janssen 9 years ago 
gnu: r-mutationalpatterns: Update to 1.2.0.

* gnu/packages/bioinformatics.scm (r-mutationalpatterns):
[source]: Update to 1.2.0,
[propagated-inputs]: Add r-bsgenome-hsapiens-1000genomes-hs37d5,
  r-bsgenome-hsapiens-ucsc-hg19.
ccd2aade — Roel Janssen 9 years ago 
gnu: r-bamsignals: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0.
37631ddc — Roel Janssen 9 years ago 
gnu: r-rhtslib: Update to 1.8.0.

* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0.
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