gnu: Add python-statannotations.

* gnu/packages/statistics.scm (python-statannotations): New variable.

Change-Id: Ib8a51d7b63c9be9af2addf193c8241569c793569
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-scikit-surprise: Use python-numpy@1.

* gnu/packages/python-science.scm (python-scikit-surprise):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.
[native-inputs]: Remove python-wheel.

Change-Id: I4ae8d087b602a04ff94ad1ef72c6ef0589938054
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-spisea: Use python-numpy@1.

* gnu/packages/astronomy.scm (python-spisea):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.

Change-Id: Iab368ddefd7e73021e1377292afa9bfbd4ccba4d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-pysynphot: Update to 2.0.0-1.a5e76c3.

* gnu/packages/astronomy.scm (python-pysynphot): Update to
a5e76c398f5b03192fa54659f81e7e1a929d9f7c commit.
[propagated-inputs]: Remove python-numpy; add python-numpy-1.
[native-inputs]: Remove python-wheel.

Change-Id: Ic2f211ff766291665fdc40df7d06884d22093f0b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-paramz Move to machinve-learning.

* gnu/packages/python-science.scm (python-paramz): Move from here ...
* gnu/packages/machine-learning.scm: ... to here.

Change-Id: I128d863626a9b70bf31c37e200d40ad6ccd48ad2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-gpy: Use python-numpy@1.

* gnu/packages/machine-learning.scm (python-gpy):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.

Change-Id: Ie8740ce69188726c58b9a6ee753bdd3ac6b214a8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-paramz: Use python-numpy@1.

* gnu/packages/python-science.scm (python-paramz):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.

Change-Id: Ibc355d9a6e1ab635f63c21fe5e068a0ddfcc906a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: rdkit: Use python-numpy@1.

* gnu/packages/chemistry.scm (rdkit)[propagated-inputs]: Remove
python-numpy; add python-numpy-1.

Change-Id: Iab529bb547832bd56040cf4ea1cc414b14c37dd2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: boost-numpy: Use python-numpy@1.

* gnu/packages/boost.scm (boost-numpy)[native-inputs]: Remove
python-numpy; add python-numpy-1.

Change-Id: I4ee9b625c69951099929873f2f7bbd7a7d0f6e29
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-scikit-learn-1.6: Skip 3 more tests.

* gnu/packages/machine-learning.scm (python-scikit-learn-1.6)[arguments]
<test-flags>: Skip 3 more tests.

Change-Id: I1c7e2eb7c18ddc5479cf45b84a6cf07d374842fe
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-vector: Update to 1.7.0.

* gnu/packages/python-science.scm (python-vector): Update to 1.7.0.
[propagated-inputs]: Add python-awkward, python-numba, and python-sympy.
[native-inputs]: Remove python-awkward and python-sympy; add python-notebook,
python-optree, and python-papermill.

Change-Id: I760c26d69b5a5e4530e80d8e57af65db2fdf319f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-papermill: Reduce closure size; skip 2 tests.

The most of the native inputs were there to tests ignored tests, they
are removed now to reduce closure size.

* gnu/packages/jupyter.scm (python-papermill):
[arguments] <test-flags>: Skip 2 failing tests.
[native-inputs]: Remove python-boto3, python-botocore, python-ipython,
python-ipywidgets, python-moto, and python-requests.

Change-Id: I4c07a024a9514a44b5819196754e44ee86d47883
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-glue-qt: Relax requirements for ipython version.

* gnu/packages/astronomy.scm (python-glue-qt):
[phases]{relax-requirements}: New phase.

Change-Id: I25ede5ae073ff7e5d568e99b29b15a95008a696f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: Remove python-xarray-datatree.

* gnu/packages/python-science.scm (python-xarray-datatree): Delete variable.

Fixes: guix/guix#5348
Change-Id: I7150cbe534f900286fb575f5883d9fe0980aa975
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-multiscale-spatial-image: Update to 2.0.3.

* gnu/packages/python-science.scm (python-multiscale-spatial-image): Update to 2.0.3.
[propagated-inputs]: Remove quasiquote and ((unquote insight-toolkit) "python"); add
python-dask, python-numpy, python-dateutil, python-spatial-image,
python-xarray, python-xarray-dataclass, and python-zarr.
[native-inputs]: Remove python-fsspec, python-ipfsspec, python-jsonschema,
python-nbmake, python-pooch, python-pytest, python-pytest-mypy,
python-urllib3, and python-zarr.

Change-Id: I22f93379f92da785f851c17d149745ea9124a999
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: Add python-xarray-dataclass.

* gnu/packages/python-science.scm (python-xarray-dataclass): New variable.

Change-Id: Id4293a97741704c434b6847b7b1ede8d35dd1edd
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-fenics-ffc: Use python-numpy@1.

* gnu/packages/simulation.scm (python-fenics-ffc):
[propagated-inputs]: Add python-numpy-1.

Change-Id: I57a991c70947babc1734660c1d6723789ef77466
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-fenics-ufl-2019: Use python-numpy@1.

* gnu/packages/simulation.scm (python-fenics-ufl-2019):
[inputs]: Remove python-numpy.
[propagated-inputs]: Add python-numpy-1

Change-Id: I3171b24924f08a6210504ee03b3726a18609b186
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-episcanpy: Use python-numpy@1.

* gnu/packages/bioinformatics.scm (python-episcanpy):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.
[native-inputs]: Remove python-pytest and python-wheel; add
python-setuptools.

Change-Id: I896e2e9c44383d71ad4cea3ca7e4f445999f5842
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-utilities-awetzel: Remove relax-requirements phase.

* gnu/packages/astronomy.scm (python-utilities-awetzel):
[phases]{relax-requirements}: Remove phase.

Change-Id: I00ac6703449056eefd27e3b0ceb60499c5a9fdcb
Signed-off-by: Rutherther <rutherther@ditigal.xyz>