gnu: r-rcpparmadillo: Update to 0.7.600.1.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
gnu: armadillo: Update to 7.600.2.
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
gnu: netcdf: Enable HDF4 support.
* gnu/packages/maths.scm (netcdf)[inputs]: Add hdf4-alt and libjpeg.
[arguments]: Add "--enable-hdf4" configure flag.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
gnu: gnuplot: Update to 5.0.5.
* gnu/packages/maths.scm (gnuplot): Update to 5.0.5.
gnu: wxmaxima: Update to 16.12.0.
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.0.
gnu: maxima: Update to 5.39.0.
* gnu/packages/maths.scm (maxima): Update to 5.39.0.
gnu: gsl: Update to 2.3.
* gnu/packages/maths.scm (gsl): Update to 2.3.
Merge branch 'master' into staging
gnu: gmsh: Update to 2.15.0.
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
Merge branch 'master' into staging
gnu: netcdf: Upgrade to 4.4.1.1.
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to
4.4.1.1.
[source]: Adjust patch name, add netcdf-tst_h_par.patch
* gnu/packages/patches/netcdf-config.date.patch: Rename to...
* gnu/packages/patches/netcdf-date-time.patch: ...this. Adjust for
latest source.
* gnu/packages/patches/netcdf-tst_h_par.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Adjust patches.
Merge branch 'master' into staging
gnu: hdf5: Update to 1.8.18 [fixes CVE-2016-{4330,4331,4332,4333}].
* gnu/packages/maths.scm (hdf5): Update to 1.8.18.
[source]: Add alternate URL.
Merge branch 'master' into python-build-system
gnu: hdf5: Build the C++ interface.
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
Merge branch 'master' into staging
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>.
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.
Signed-off-by: Leo Famulari <leo@famulari.name>
gnu: octave: Update to 4.2.0.
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
Merge branch 'core-updates'
gnu: gmsh: Update to 2.14.1
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>