gnu: Use HTTPS for all sourceforge.net home pages.

* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS.
* gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise.
* gnu/packages/display-managers.scm (slim)[home-page]: Likewise.
* gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise.
* gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix,
ghc-regex-compat)[home-page]: Likewise.
* gnu/packages/image.scm (imlib2)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw)
[home-page]: Likewise.
* gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools)
[home-page]: Likewise.
* gnu/packages/mail.scm (esmtp)[home-page]: Likewise.
* gnu/packages/mp3.scm (ripperx)[home-page]: Likewise.
* gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise.
* gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise.

gnu: r-genomicranges: Update to 1.26.2.

* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.2.

gnu: r-genomeinfodb: Update to 1.10.2.

* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.2.

gnu: python-dendropy: Update to 4.2.0.

* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.

gnu: diamond: Update to 0.8.31.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.

gnu: multiqc: Update to 0.9.

Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>.

* gnu/packages/bioinformatics.scm (multiqc): Update to 0.9.
[origin]: Add patch.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

gnu: r-genomicfeatures: Update to 1.26.2.

* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2.

gnu: r-biostrings: Update to 2.42.1.

* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1.

gnu: r-limma: Update to 3.30.7.

* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7.

gnu: r-variantannotation: Update to 1.20.2.

* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2.

gnu: r-edger: Update to 3.16.5.

* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5.

gnu: r-genomeinfodb: Update to 1.10.1.

* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1.

gnu: r-iranges: Update to 2.8.1.

* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1.

gnu: r-s4vectors: Update to 0.12.1.

* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.

gnu: r-biocstyle: Update to 2.2.1.

* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1.

gnu: r-deseq2: Update to 1.14.1.

* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1.

gnu: r-annotate: Update to 1.52.1.

* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1.
[propagated-inputs]: Add r-rcurl.

gnu: r-qtl: Update to 1.40-8.

* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8.

gnu: r-rcas: Update to 1.1.1.

* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.1.1.
[propagated-inputs]: Add plotrix.

gnu: diamond: Update to 0.8.30.

* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.30.