gnu: python-zarr: Remove extra propagated-inputs.

* gnu/packages/python-xyz.scm (python-zarr):
[propagated-inputs]: Remove python-ipywidgets,
python-notebook, python-numpydoc, pyhon-pydata-sphinx-theme.

Change-Id: Ie6161fb3fd3ff989cb09f0d1e7bb4c94aaad8fab
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-numcodecs: Remove extra propagated-inputs.

* gnu/packages/python-xyz.scm (python-numcodecs):
[propagated-inputs]: Remove python-coverage and python-numpydoc.

Change-Id: Ia7f7e52dea7460c37b3eb5a64c23e1c53507fc68
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-anndata: Add test dependency python-filelock.

It was found this build issue while building dependents of python-zarr.

* gnu/packages/python-science.scm (python-anndata):
[native-inputs]: Add python-filelock; missing for tests.

Change-Id: Ia83b631bc321f43e7a51fa558753f6189530bd76
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-durationpy.

* gnu/packages/python-xyz.scm (python-durationpy): New variable.

Change-Id: Ibb3ee965a1f121dc0301f3fdaaea2a432cad5010
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: aerich: Update to 0.9.2.

As it's a final program all propagated inputs moved to inputs.

* gnu/packages/databases.scm (aerich): Update to 0.9.2.
[arguments] <test-flags>: Skip one tests searching for "uvx".
[inputs]: Add python-anyio, python-asyncclick, python-dictdiffer,
python-tortoise-orm, python-aiomysql, python-asyncmy, python-asyncpg,
python-psycopg, and python-tomli-w.
[propagated-inputs]: Remove python-asyncclick, python-asyncmy,
python-asyncpg, python-dictdiffer, python-pydantic, python-tomli-w, and
python-tortoise-orm.
[native-inputs]: Remove python-poetry-core; add python-pdm-backend,
python-pydantic-2, python-pydantic-settings, and python-tortoise-vector.

Change-Id: I9bcb13f0fc9f70428b5f794893d1a4bddf611a5d

gnu: Add python-tortoise-vector.

* gnu/packages/databases.scm (python-tortoise-vector): New variable.

Change-Id: Ib6646bc813fe04ba6e55b2b78dff373d2b52268e

gnu: python-asyncclick: Update to 8.3.0.3.

Upstream has resolved all issues:
- <https://github.com/python-trio/asyncclick/issues/39>
- <https://github.com/python-trio/asyncclick/issues/42>

* gnu/packages/python-xyz.scm (python-asyncclick): Update to 8.3.0.3.
[arguments]: Drop all.
[native-inputs]: Remove python-anyio; add less.
[propagated-inputs]: Add python-anyio.

Change-Id: I689ddbe231760a21986080b0dbcebdf6c56f1039

gnu: Remove python-dbus-next.

* gnu/packages/python-xyz.scm (python-dbus-next): Delete variable.

Fixes: guix/guix#2725
Change-Id: Ifc65d8e1c5efaa40e1e43f0b457878302a93dc43

gnu: Add zola.

* gnu/packages/rust-apps.scm (zola): New variable.
* gnu/packages/rust-crates.scm (zola): Map cargo inputs.

Change-Id: I9b7fb89af687f4a58c8ff77effc5695773363165
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: python: Graft secure package.

* gnu/packages/python.scm (python/fixed): Add new variable.
(python): Graft python/fixed.

Change-Id: I8b1537a64be1984c52170ba3f2fbdca5737290e8

gnu: python-3.10: Update to 3.10.19.

* gnu/packages/python.scm (python-3.10): Update to 3.10.19.

Change-Id: Ib38ee006d8deaed8029000b5202547b001cb8f6c

gnu: btop: Update to 1.4.5.

* gnu/packages/admin.scm (btop): Update to 1.4.5.

Change-Id: Idbe210521579f83188f52ac929d313c7accbc753

gnu: thermald: Update to 2.5.10.

* gnu/packages/admin.scm (thermald): Update to 2.5.10.
[home-page]: Set URI to "https://github.com/intel/thermal_daemon" as the
original URI is permanently redirected.

Change-Id: I2fa1ff116de64c2c8e9476fe7f529a5c1542ba41

gnu: python-dask-image: Fix tests.

* gnu/packages/python-science.scm (python-dask-image)[arguments]
<test-flags>: Rework skipped tests and enable more tests.
[propagated-inputs]: Remove python-tifffile; add
python-tifffile-for-dask-image.
[description]: Remove new line in the end.

* gnu/packages/python-xyz.scm (python-tifffile-for-dask-image): New variable.

Change-Id: I8539569aab1134d049ec8e8c0041191ce61e2eb7

gnu: python-icontract: Fix tests.

* gnu/packages/python-check.scm (python-icontract)[arguments] <phases>:
Add 'relax-requirements.
[native-inputs]: Remove python-wheel; add python-deal,
python-dpcontracts, and python-pytest.

Change-Id: Ie2d418673f15f7db3128c5a0b81a320765fc5df7

gnu: Add python-deal.

* gnu/packages/python-check.scm (python-deal): New variable.

Change-Id: I2d3e96329715471a559fe154c0dbdd7d666e908b

gnu: Add python-dpcontracts.

* gnu/packages/python-check.scm (python-dpcontracts): New variable.

Change-Id: Iaaf6aedfd1e4f1f853fe70cc821edcaa805b9dbd

gnu: python-typeshed-client: Update to 2.8.2.

* gnu/packages/python-xyz.scm (python-typeshed-client): Update to 2.8.2.
[source]: Switch to git-fetch providing test data.
[arguments] <test-backend>: Use custom.
[propagated-inputs]: Add python-typing-extensions.
[native-inputs]: Remove python-wheel.

Change-Id: Icfbb809b45e0ca9e4b29237f0f622d77928f9730

gnu: python-lfdfiles: Update to 2025.9.17.

* gnu/packages/python-xyz.scm (python-lfdfiles): Update to 2025.9.17.
[source, propagated-inputs]: Improve style.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: I728400b74276b036d021c25b6c25c92709f7776c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-tifffile: Update to 2025.10.4.

* gnu/packages/python-xyz.scm (python-tifffile): Update to 2025.10.4.
[build-system]: Switch to pyproject-build-system.
[arguments, description]: Improve style.
[native-inputs]: Add python-setuptools.  Remove python-pytest, as
tests are not run.

Change-Id: Ica27197142bf7f80a7078cae1581b65a73a9b4b2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>