gnu: mpd: Update to 0.19.9.
* gnu/packages/mpd.scm (mpd): Update version to 0.19.9. Add boost and
icu4c.
gnu: Add ruby-hoe.
* gnu/packages/ruby.scm (ruby-hoe): New variable.
gnu: Add mpdscribble.
* gnu/packages/mpd.scm (mpdscribble): New variable.
system: Create a single-file certificate bundle in /etc/ssl/certs.
Suggested by Mark H Weaver <mhw@netris.org>.
* gnu/system.scm (certificate-bundle): New procedure.
(etc-directory): Use it.
[profile]: Set 'SSL_CERT_DIR', 'SSL_CERT_FILE', and 'GIT_SSL_CAINFO'.
system: Add 'x509-certificates' field, and populate /etc/ssl/certs.
* gnu/system.scm (<operating-system>)[x509-certificates]: New field.
(etc-directory): Add #:x509-certificates parameter and honor it.
(operating-system-etc-directory): Pass #:x509-certificates in
'etc-directory' call.
* doc/guix.texi (operating-system Reference): Document
'x509-certificates'.
gnu: Remove 'guile-reader-for-guile_1.8'.
This was a useful example back in July 2012, but not very useful
beyond that.
* gnu/packages/guile.scm (guile-reader): Turn into a plain package.
[source]: Use mirror:// URI.
[inputs]: Use GUILE-2.0.
[arguments]: Use the site/2.0 directory for --with-moduledir.
(guile-reader/guile-1.8, guile-reader/guile-2.0): Remove.
services: xorg: Fix file descriptor leak from SLiM/xinitrc.
This reverts commit 9515b745547cff08ad5b958bc54323dab19f29b9.
* gnu/services/xorg.scm (xinitrc)[builder](close-all-fdes): Start from
file descriptor 3.
gnu: Add llvm-3.6.0 and clang-3.6.0.
* gnu/packages/llvm.scm (llvm): Update to 3.6.0.
(clang-from-llvm): New procedure.
(clang): Update to 3.6.0. Reimplement using 'clang-from-llvm'.
(llvm-3.5, clang-3.5): New variables.
gnu: Add crossmap.
* gnu/packages/bioinformatics.scm (crossmap): New variable.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
gnu: gtk-xfce-engine: Update to 2.10.0.
* gnu/packages/xfce.scm (gtk-xfce-engine): Update to 2.10.0.
gnu: Add CLIPper.
* gnu/packages/bioinformatics.scm (clipper): New variable.
gnu: Add Scikit-learn.
* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): New
variables.
gnu: xfconf: Re-enable tests.
* gnu/packages/xfce.scm (xfconf)[arguments]: Add #:phases.
gnu: Add MACS.
* gnu/packages/bioinformatics.scm (macs): New variable.
gnu: Add pybedtools.
* gnu/packages/bioinformatics.scm (python2-pybedtools): New variable.
gnu: Add pyyaml.
* gnu/packages/python.scm (python-pyyaml, python2-pyyaml): New variables.
gnu: libotr: Update to 4.1.0.
* gnu/packages/messaging.scm (libotr): Update to 4.1.0.
gnu: xfconf: Update to 4.12.0.
* gnu/packages/xfce.scm (xfconf): Update to 4.12.0. Disable tests.
gnu: gnu-pw-mgr: Update to 1.3.
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.3.