gnu: r-abn: Update to 3.0.6.

* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.6.
[native-inputs]: Replace r-r-rsp with r-knitr.

Change-Id: Ic102988a2017ad0d073df3bd88dcc75aa131c1d3

gnu: r-unigd: Update to 0.1.1.

* gnu/packages/cran.scm (r-unigd): Update to 0.1.1.

Change-Id: I9c6c0ed7b17eaf56cd0fe8b292055cee17dd8939

gnu: r-workflowsets: Update to 1.1.0.

* gnu/packages/cran.scm (r-workflowsets): Update to 1.1.0.

Change-Id: I0d91244d46687b87b0a6141319fae92f48f7f005

gnu: r-qpdf: Update to 1.3.3.

* gnu/packages/cran.scm (r-qpdf): Update to 1.3.3.
[properties]: Tell updater to add qpdf as an extra input.

Change-Id: Ife0ac414114df6bfe38d1ecae0544ecad75d6e94

gnu: wesnoth: Update to 1.18.0.

* gnu/packages/games.scm (wesnoth): Update to 1.18.0.
[arguments]: Pass "-DENABLE_SYSTEM_LUA=ON" to 'configure-flags'.  Add phases.
[inputs]: Remove fribidi, sdl-union, sdl2-ttf.  Add curl, lua-5.4.
[native-inputs]: Add python-minimal.
(wesnoth-server): Update to 1.18.0.
[inputs]: Remove sdl2.  Add lua-5.4.
[native-inputs]: Replace with pkg-config.
[arguments]: Rewrite with 'substitute-keyword-arguments'.

Change-Id: I1ee4237dbbaeeb9d5a93637d740fbf4dba0922d2
Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: endless-sky: Update to 0.10.6.

* gnu/packages/games.scm (endless-sky): Update to 0.10.6.

Change-Id: Ie2fe40f56e721f269a4b9cc0e3fe08390fb5d2e0
Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: libatasmart: Fix cross-compiling to riscv64-linux.

* gnu/packages/freedesktop.scm (libatasmart)
[native-inputs]: When cross compiling to riscv64-linux-gnu, add config.
[arguments]: When target riscv64-linux-gnu, add update-config phase.

Change-Id: I491c43a6ce2c3fc3aed43ecab9d4a2ab251038bb
Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: slock: Fix cross-compiling.

* gnu/packages/suckless.scm (slock)[arguments]: Use Gexp.

Change-Id: I491c43a6ce2c3fc3aed43ecab9d4a2ab251038bb
Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: icewm: Update to 3.4.6.

* gnu/packages/wm.scm (icewm): Update to 3.4.6.
[arguments]: Remove the deletion of gmo files as they are not regenerated
correctly (see #68439).

Change-Id: Ieff1fc5417cfe164fa7886774e8855fd95248c8f
Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: moonfish: Improve description.

* gnu/packages/games.scm (moonfish): Reword description.

Change-Id: I1641cedc34f28dc47b021be6bcfc2943b9abcc0d
Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: moonfish: Update to 0-2.fb2cb4f.

* gnu/packages/games.scm (moonfish): Update to 0-2.fb2cb4f.
[arguments]: Use upstream's makefile for building and installing.
Install tools into the "out" output instead of the "tools" output.
[outputs]: Remove "tools".

Change-Id: I0f098b02633d397fe1fef67863c3cd5b1db19214
Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: diffoscope: Update to 261.

* gnu/packages/diffoscope.scm (diffoscope): Update to 261.

Signed-off-by: Christopher Baines <mail@cbaines.net>

gnu: insight-toolkit: Build and install Python bindings.

* gnu/packages/image-processing.scm (insight-toolkit)[outputs]: Add "python"
output.
[arguments]: Add configure flags to build Python bindings; add phase
'ignore-warnings.
[native-inputs]: Add castxml, swig, and which.
(insight-toolkit-4)[outputs]: Override.
[native-inputs]: Override.

Change-Id: I4177d0c0239027290678a43f2ea26cb8e1e74918

gnu: Add castxml.

* gnu/packages/cpp.scm (castxml): New variable.

Change-Id: I11fe3bce19a1bdb1170aa81547574836a823bcb8

gnu: libgit2-1.6: Update to 1.6.5.

* gnu/packages/version-control.scm (libgit2-1.6): Update to 1.6.5.

Change-Id: If7e616e7baab21f400347cb175db028f33f4b46f

gnu: clang-18: Add compiler-cpu-architectures entry.

* gnu/packages/llvm-meta.scm (clang-compiler-cpu-architectures): Add
entry for x86_64 for clang-18 for new optimization architectures.

Change-Id: I6301c28b5032caf520aa974c70c500e12d088e63

gnu: Add llvm-18.

* gnu/packages/llvm.scm (clang-runtime-from-llvm)[native-inputs]: When
building clang-runtime-18 or newer use gcc-13.
(%llvm-monorepo-hashes): Add entry for llvm-18.
(%llvm-patches): Add entry for llvm-18.
(llvm-18, clang-runtime-18, clang-18, libomp-18, clang-toolchain-18):
New variables.
* gnu/packages/patches/clang-18.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I4027065398300104c6a310187007448f5b2780c1

gnu: monero-gui: Update to 0.18.3.3.

* gnu/packages/finance.scm (monero-gui): Update to 0.18.3.3.

Change-Id: I68c6bace805b20de7b172687542a997db48b515b

gnu: monero: Update to 0.18.3.3.

* gnu/packages/finance.scm (monero): Update to 0.18.3.3.

Change-Id: I9fb61fc648f4839642138ae7b577a1452513891e

gnu: xterm: Update to 390.

* gnu/packages/xorg.scm (xterm): Update to 390.

Change-Id: I136f0ad8670642a9afec3811b47138e360f34f3a