gnu: cross-gcc: Handle AVR inputs.

* gnu/packages/cross-base.scm (cross-gcc)[native-inputs]: Add case to
handle AVR.

Change-Id: I1ac38b721ed807302747cecb5fb1f6075694a01a
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: cross-libc: Add AVR Libc support.

* gnu/packages/avr.scm (make-avr-libc/implementation)[arguments]: Add
avr target parameter and disable implicit cross inputs.
[native-inputs]: Rename avr-gcc and avr-binutils to cross-gcc
and cross-binutils to keep consistency with gnu-build-system.
* gnu/packages/cross-base.scm (cross-libc): Add case for avr.

Change-Id: I6b087946d1287a82fac61c48c513e7f2d2184794
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: cross-gcc: Handle target include paths.

* gnu/packages/cross-base.scm (cross-gcc-search-paths): New procedure.
(cross-gcc)[search-paths]: Convert to and use cross-gcc-search-paths
procedure.

Change-Id: Id306782eaf928d05cd005b9539087ed631506b5b
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: cross-gcc: Enable multilib for AVR.

* gnu/build/cross-toolchain.scm (patch-multilib-shebang): New procedure.
* gnu/packages/avr.scm (make-avr-gcc): Remove uneeded phases and flags
  for multilib.
* gnu/packages/cross-base (cross-gcc-arguments) <#:configure-flags>
  [target-avr?]: Remove --disable-multilib and add --enable-multilib.

Change-Id: Id68d803057ac898f0a670f10487b08bf0891ab0b
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: make-avr-libc: Fix synopsis.

* gnu/packages/avr.scm (make-avr-libc/implementation): Drop 'The' from
  synopsis.

Change-Id: Idb6c008d709a988075789a6220af63f4917c2179
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: microscheme: Move to avr-xyz.

* gnu/packages/avr.scm (microscheme): Move to ...
* gnu/packages/avr-xyz.scm (microscheme): ... here.

Change-Id: I1272bfc98b583ab0ab36fcba5a8e19ae018b0b80
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: cross-libc: Return #f if no libc available.

* gnu/packages/cross-base.scm (cross-libc): Return #f if no libc is
available for the given TARGET.

Change-Id: I17d19716373dd5704bb70d805437738fd29bd96b
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: gerbv: Use a source file-name.

* gnu/packages/engineering.scm (gerbv)[source]: Add file-name field.

Change-Id: Ia0264233a75aa6fc2bd54de23c9510e184cbee31

gnu: Add r-polyester.

* gnu/packages/bioconductor.scm (r-polyester): New variable.

Change-Id: I415089cda3214ec04402fc6f4505fa868414d0e2
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>

gnu: linux-libre 6.1: Update to 6.1.66.

This release contains fix for an Ext4 data corruption bug introduced in 6.1.64:

https://lore.kernel.org/all/20231205122122.dfhhoaswsfscuhc3@quack3/T/#t
https://lwn.net/Articles/954285/

Only 6.1.64 and 6.1.65 are affected kernel releases:

https://lists.gnu.org/archive/html/guix-devel/2023-12/msg00082.html

* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.66.
(linux-libre-6.1-pristine-source): Update hash.

Change-Id: I788e4e6bd49607bc7301d8dd780ebebd7c213313
Signed-off-by: Hilton Chain <hako@ultrarare.space>

gnu: openmw: Update to 0.48.0.

* gnu/packages/game-development.scm (openmw): Update to 0.48.0.
* gnu/packages/graphics.scm (openmw-openscenegraph): Update to commit 68c5c5.

Change-Id: I5e1ae0d59ead8de7976714cb82e8d514c308f19a
Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: guile-gitlab: Improve the package style.

* gnu/packages/guile-xyz.scm (guile-gitlab): Improve the package style.
  [inputs]: Remove input labels.

Change-Id: I449a02e1f9d700f678bb09961b896dea1627632e
Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: guile-smc: Update to 0.6.3.

* gnu/packages/guile-xyz.scm (guile-smc): Update to 0.6.3.

Change-Id: I7569db118c85f86e11906c41f4256be173ccc092
Signed-off-by: Ludovic Courtès <ludo@gnu.org>

services: Fix oci-container-service-type container user.

The oci-container-configuration supports two user fields: one is the
user, from the host system, under whose authority the OCI-backed
Shepherd service is run; the other is an optional user/UID that can be
passed to the docker run invokation to override the user defined in the
OCI image.

The user from the host system is incorrectly passed to docker run
command, this patches reverts the incorrect behavior and passes the
correct container-user field value.

* gnu/services/docker.scm (oci-container-configuration): Fix the user
passed to the docker run invokation.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

file-systems: Add tracefs to %pseudo-file-system-types.

* gnu/system/file-systems.scm (%pseudo-file-system-types): Add tracefs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: ‘make-icecat-extension’ inherits package location.

This is an improvement for the purposes of ‘guix edit’ & co.

* gnu/build/icecat-extension.scm (make-icecat-extension): Add ‘location’
field.

Change-Id: I896ae6823b3fe4ea013fa74e2c536f45664d8042

gnu: Add KeePassXC-Browser.

* gnu/packages/browser-extensions.scm (keepassxc-browser)
(keepassxc-browser-icecat): New variable.

Change-Id: I6f85228e4e012f3e5f8c913fda38287255573604

gnu: keepassxc: Record file name of ‘xclip’ and ‘wl-copy’.

* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add
‘record-clipboard-programs’ phase.
[inputs]: Add WL-CLIPBOARD and XCLIP.

Change-Id: I3cfe3d8604da575f6bf5e5cf3ce862fbac099ab6

gnu: ubuntu-keyring: Update to 2023.11.28.1.

* gnu/packages/debian.scm (ubuntu-keyring): Update to 2023.11.28.1.
[native-inputs]: Remove gzip; add xz.

Change-Id: Id90acc7a58085321ac96b6ab520f54b20911a8c1

gnu: tor: Update to 0.4.8.10.

* gnu/packages/tor.scm (tor): Update to 0.4.8.10.

Change-Id: Ibc11c83c3fea920c6b876a22cb4c96d5c927beb5