gnu: pcsxr: Improve style.

* gnu/packages/emulators.scm (pcsxr): Fix indentation.
[arguments]: Use gexps.

Change-Id: Ibd17d9aeef9509cc58a872d72acb5283c7470f19

gnu: pcsxr: Update to 1.9.94-1.6666043.

* gnu/packages/emulators.scm (pcsxr): Update to 1.9.94-1.6666043.
[configure-flags]: Prevent compile errors.
[phases]: Remove 'ch-subdir.
[source]<origin>: Change upstream and commit.
<patches>: Add patches.
[home-page]: Change from dead link to active GitHub page.
* gnu/packages/patches/pcsxr-find-harfbuzz.patch: Add it.
* gnu/packages/patches/pcsxr-fix-definitions.patch: Add it.
* gnu/local.mk: Register them.

Change-Id: I5ebc91b3fa44152057cf197c0ab018fa064241a4

gnu: trealla: Update to 2.80.4.

* gnu/packages/prolog.scm (trealla): Update to 2.80.4.

Change-Id: Ie7eadb85f7b98cafc388e0f89ecbb43c66c9538d

gnu: yt-dlp: Update to 2025.07.21.

* gnu/packages/video.scm (yt-dlp): Update to 2025.07.21.

Change-Id: Ibb622c89db35299df3241395e4426ed207b6bfb9

gnu: python-safety: Update to 3.6.0.

* gnu/packages/python-xyz.scm (python-safety): Update to 3.6.0.
[build-system]: Use pyproject-build-system.
[arguments]<#:test-flags>: Skip failing tests.
<#:phases>: Delete the 'disable-tests' phase. Add phase
'set-home' before 'check'.
[native-inputs]: Add nss-certs-for-test, python-hatchling,
python-pytest.
[propagated-inputs]: Add python-authlib, python-filelock, python-httpx,
python-jinja2, python-marshmallow, python-nltk, python-psutil,
python-pydantic-2, python-ruamel.yaml, python-safety-schemas,
python-tenacity, python-tomli, python-tomlkit, python-typer,
python-typing-extensions.

Change-Id: I96ea41399f5b0068b7fe5d1816dda16e7be18c75

gnu: python-safety: Improve style.

* gnu/packages/python-xyz.scm (python-safety): Run guix style.

Change-Id: I711eee17b0681c65c9044231c16673cd3e48bf4d

gnu: Add python-safety-schemas.

* gnu/packages/python-xyz.scm (python-safety-schemas): New variable.

Change-Id: Iec3bb513e2c96bda5b7019404fb2315f09c5023d

gnu: python-deepdiff: Update to 8.5.0.

* gnu/packages/python-xyz.scm (python-deepdiff): Update to 8.5.0.
[arguments]<#:test-flags>: Skip failing tests.
[propagated-inputs]: Remove python-ordered-set. Add python-click,
python-pyyaml, python-orderly-set, python-orjson.
[native-inputs]: Remove python-click, python-dateutil,
python-mock, python-setuptools, python-wheel, python-toml. Add
python-flit-core, python-pandas, python-pydantic-2,
python-pytest-benchmark, python-pytz, python-toml-w.

Change-Id: I891fe650e13385a69141b201e3ec743733d71610

gnu: Add python-orderly-set.

* gnu/packages/python-xyz.scm (python-orderly-set): New variable.

Change-Id: I8aa2dfebc6452c96a8e49a4697b62e901b5be9e9

gnu: python-typer: Update to 0.16.0.

* gnu/packages/python-xyz.scm (python-typer): Update to 0.16.0.
[source, home-page]: Follow redirect.
[arguments]: Remove '#:test-flags', enabling all tests.
<#:phases>: Delete the 'patch-shell-reference' phase.
[native-inputs]: Remove python-flit. Add python-pdm-backend. Move
python-rich, python-shellingham to ...
[propagated-inputs]: ... here. Add python-typing-extensions.

Change-Id: I64232bee0bbeb533286d6ae8a14a680ceb825d75

gnu: python-shellingham: Update to 1.5.4.

* gnu/packages/python-xyz.scm (python-shellingham): Update to 1.5.4.
[build-system]: Use pyproject-build-system.
[arguments]<#:phases> Do not override the 'check' phase.
[native-inputs]: Add python-setuptools, python-wheel.

Change-Id: I4bb680ac627497394067145fab5693f76f1c89e7

gnu: python-nltk: Update to 3.9.1.

* gnu/packages/python-xyz.scm (python-nltk): Update to 3.9.1.
[source]: Use the tarball.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove unzip. Add python-setuptools, python-wheel.

Change-Id: Id507bbb5d10b248fa10fbfa73f22e44338f1fa25

gnu: python-nltk: Improve style.

* gnu/packages/python-xyz.scm (python-nltk): Run guix style.
[home-page]: Follow redirect.
[description]: Start sentence with a noun.

Change-Id: Ifb9cc4d069326f0c12cb6e3ab23540469d22e096

gnu: python-dparse: Update to 0.6.4.

* gnu/packages/python-xyz.scm (python-dparse): Update to 0.6.4.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling.
[propagated-inputs]: Remove python-pyyaml.

Change-Id: I4e79c895348275c1542e5aeab511c18683478511

gnu: python-dparse: Improve style.

* gnu/packages/python-xyz.scm (python-dparse): Run guix style.

Change-Id: Ibafa341c0004fde1763778c6d6012166045971d3

gnu: rspamd: Update to 3.12.1.

* gnu/packages/mail.scm (rspamd): Update to 3.12.1.
[arguments]: Replace check phase.
[inputs]: Add libarchive, libbfd and libiberty.

gnu: Remove evolution-data-server-3.44.

* gnu/packages/gnome.scm (evolution-data-server-3.44): Delete variable.

Change-Id: I00e24e7350158a69b80d8526705a3234d59b2252

gnu: Remove geocode-glib-with-libsoup2.

* gnu/packages/gnome.scm (geocode-glib-with-libsoup2): Delete variable.

Change-Id: I5a81690b449e9d5fa11ca25faead4d8c6782ded2

gnu: Remove folks-with-libsoup2.

* gnu/packages/gnome.scm (folks-with-libsoup2): Delete variable.

Change-Id: I840575bcda250e2f06dd50d6f1985a01b1fbdc96

gnu: pantheon-calendar: Modernize inputs.

* gnu/packages/pantheon.scm (pantheon-calendar)[inputs]: Remove
evolution-data-server-3.44, folks-with-libsoup2, and
geocode-glib-with-libsoup2; add evolution-data-server, folks, and
geocode-glib.

Change-Id: Iccb94901a7d1c64555d7e5a30741115aa78f6fce