gnu: Update r-mutationalpatterns to 1.4.1.

* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.1.

gnu: Add r-copynumber.

* gnu/packages/bioinformatics.scm (r-copynumber): New variable.

gnu: Add java-picard-1.113.

* gnu/packages/bioinformatics.scm (java-picard-1.113): New variable.

gnu: Add java-picard.

* gnu/packages/bioinformatics.scm (java-picard): New variable.

gnu: java-htsjdk: Update to 2.3.0.

* gnu/packages/bioinformatics.scm (java-htsjdk): Update to 2.3.0.
[arguments]: Build with JDK 8.
[inputs]: Add java-ngs, java-snappy, java-commons-compress,
java-commons-logging-minimal, java-commons-jexl-2, and java-xz.
[native-inputs]: Add java-testng.

gnu: r-rhdf5: Fix build phase.

* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Fix "unpack-smallhdf5"
phase.

gnu: subread: Update to 1.6.0.

* gnu/packages/bioinformatics.scm (subread): Update to 1.6.0.

gnu: idr: Update to 2.0.3.

* gnu/packages/bioinformatics.scm (idr): Update to 2.0.3.
[source]: Add snippet to remove generated code.

gnu: idr: Correct license.

* gnu/packages/bioinformatics.scm (idr)[license]: Change to GPLv2+.

gnu: r-genomeinfodbdata: Update to 0.99.1.

* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 0.99.1.

gnu: r-go-db: Update to 3.5.0.

* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.5.0.

gnu: r-org-ce-eg-db: Update to 3.5.0.

* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.5.0.

gnu: r-org-dm-eg-db: Update to 3.5.0.

* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.5.0.

gnu: r-org-mm-eg-db: Update to 3.5.0.

* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.5.0.

gnu: r-genomationdata: Update to 1.10.0.

* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.10.0.

gnu: Remove duplicate from (gnu packages bioinformatics).

* gnu/packages/bioinformatics.scm (r-annotationfilter): Remove duplicate.

gnu: r-org-hs-eg-db: Clarify description.

* gnu/packages/bioinformatics.scm (r-org-hs-eg-db)[description]: Clarify.

gnu: r-org-hs-eg-db: Update to 3.5.0.

* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.5.0.

gnu: r-org-hs-eg-db: Remove duplicate package definition.

* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Remove duplicate variable.

gnu: Move testing packages from python.scm to check.scm.

* gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api,
python-mock, python2-mock, python-mock-2, python-nose, python2-nose,
python-nose2, python2-nose2, python-unittest2, python2-unittest2,
python-pytest, python2-pytest, python-pytest-3.0, python2-pytest-3.0,
python-pytest-cov, python2-pytest-cov, python-pytest-runner,
python2-pytest-runner, python-pytest-mock, python2-pytest-mock,
python-pytest-xdist, python2-pytest-xdist, python-scripttest,
python2-scripttest, python-testtools, python2-testtools, python-testscenarios,
python2-testscenarios, python-testresources, python2-testresources,
python-subunit, python2-subunit, python-fixtures, python2-fixtures,
python-testrepository, python2-testrepository, python-coverage,
python2-coverage, python-cov-core, python2-cov-core, python-testpath,
python2-testpath, python-testlib, python2-testlib, python-pytest-cache,
python2-pytest-cache, python-pytest-localserver, python-pytest-xprocess,
python-pytest-subtesthack, python2-pytest-subtesthack, python-hypothesis,
python2-hypothesis, python-lit, python2-lit, python-pytest-pep8,
python2-pytest-pep8, python-pytest-flakes, python2-pytest-flakes,
python2-coverage-test-runner, python-pylint, python2-pylint,
python-paramunittest, python2-python-paramunittest, python-pytest-warnings,
python2-pytest-warnings, python-pytest-capturelog, python2-pytest-capturelog,
python-pytest-catchlog, python2-pytest-catchlog, python-nosexcover,
python2-nosexcover, python-discover, python2-discover, behave, python-rednose,
python2-rednose, python-nose-randomly, python2-nose-randomly,
python-nose-timer, python2-nose-timer): Move from here...
* gnu/packages/check.scm: ...to here.
* gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/backup.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm,
gnu/packages/dav.scm,
gnu/packages/django.scm,
gnu/packages/freedesktop.scm,
gnu/packages/haskell.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/ldc.scm,
gnu/packages/libffi.scm,
gnu/packages/mail.scm,
gnu/packages/mpd.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm: Adjust accordingly.