~ruther/guix-local

3d7c4915 — Sharlatan Hellseher 11 months ago 
gnu: python-seaborn: Update to 0.13.2.

* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.13.2.
  [arguments] <test-flags>: Run tests in parallel, supported upstream.
  [native-inputs]: Remove python-flake8, python-ipykernel,
  python-nbconvert, python-numpydoc, python-mypy, python-pytest-cov, and
  python-pyyaml.

Change-Id: Ie8df114f7b617a8c5ce0999242b47e84f8255fa6
debc80b4 — Sharlatan Hellseher 11 months ago 
gnu: python-statsmodels: Update to 0.14.4.

* gnu/packages/statistics.scm (python-statsmodels): Update to 0.14.4.
  [native-inputs]: Remove python-colorama, python-cython, python-flake8,
  python-isort, python-joblib, python-pytest, python-pytest-randomly,
  python-pytest-xdist, python-setuptools, and python-wheel; add
  python-cython-3 and python-setuptools-next.

Change-Id: I59164ed861224bfb8230686b2133639a7d1c649e
c22b6731 — Sharlatan Hellseher 11 months ago 
gnu: Add python-session-info2.

* gnu/packages/python-xyz.scm (python-session-info2): New variable.

Change-Id: I8773329702f7ef7c6c9a929317cc3d5295b8b507
c1aa8035 — Sharlatan Hellseher 11 months ago 
gnu: Add python-hatch-docstring-description.

* gnu/packages/python-build.scm (python-hatch-docstring-description): New variable.

Change-Id: I859fbd0beb3a31c812c818caf0eabc75e55df9b8
80e27d57 — Sharlatan Hellseher 11 months ago 
gnu: blast+: Update to 2.17.0.

* gnu/packages/bioinformatics.scm (blast+): Update to 2.17.0.

Change-Id: I37b460e057b392a88934a03f9a41d2b445e08f20
f470fc04 — Sharlatan Hellseher 11 months ago 
gnu: java-cisd-jhdf5: Fix build with gcc@14.

* gnu/packages/java.scm (java-cisd-jhdf5): [phases]
{build-native-library}: Add "-Wno-error=implicit-function-declaration"
option to relax GCC strictness.

Change-Id: Icee8001a4908e9124b76bf1ffb27d2659868e32d
51e8d1cb — Sharlatan Hellseher 11 months ago 
gnu: salmon: Update to 1.10.3, fix build.

* gnu/packages/bioinformatics.scm (salmon): Update to 1.10.3.
[inputs]: Update pufferfish sources.

Change-Id: Iba95cc2bc61bbd8bddd1c9b679c9705e260a1364
e3a90b81 — Sharlatan Hellseher 11 months ago 
gnu: lmms: Fix build.

Fixes guix/guix#1802

* gnu/packages/music.scm (lmms) [arguments] <phases>: Add
'fix-carla-export.

Change-Id: I763418c78068388c76066a62b7bf9277afe3a355
659d44ce — Sharlatan Hellseher 11 months ago 
gnu: r-voltron: Fix tests.

* gnu/packages/bioinformatics.scm (r-voltron): [inputs]: Add which.

Change-Id: Id16ef6a5810f592a349249f1327dc747db9a66b1
4dbe5519 — Sharlatan Hellseher 11 months ago 
gnu: r-stringfish: Update to 0.17.0, fix build with gcc@14.

* gnu/packages/cran.scm (r-stringfish): Update to 0.17.0.
  [arguments] <phases>: Add 'use-system-tbb, and
  'relax-gcc-14-strictness.
  [inputs]: Add tbb-2020.

Change-Id: Ibb7b7fface988727b185763b47cf7074119088f0
41df2ab1 — Sharlatan Hellseher 11 months ago 
gnu: r-hdf5dataframe: Update to 0.0.0-2.1e30e6b.

* gnu/packages/bioinformatics.scm (r-hdf5dataframe): Update to 0.0.0-2.1e30e6b.
[native-inputs]: Add r-testthat.

Change-Id: I4b7b933dd8fe668d03f3e04ccd78336b4efa7e5f
e716c800 — Sharlatan Hellseher 11 months ago 
gnu: python-mudata: Update to 0.3.2.

* gnu/packages/bioinformatics.scm (python-mudata): Update to 0.3.2.

Change-Id: I60c2b5d16dd1afddafc5f06231d6c5bf28a4b20c
b91c64a3 — Sharlatan Hellseher 11 months ago 
gnu: python-anndata: Update to 0.12.1.

* gnu/packages/python-science.scm (python-anndata): Update to 0.12.1.
  [arguments] <test-flags>: Rework ignored and skipped tests.
  [propagated-inputs]: Remove python-exceptiongroup and
  python-numcodecs; add python-legacy-api-wrap.
  [native-inputs]: Remove python-pytest-doctestplus, python-toml, and
  python-flit.

Change-Id: I46c46c73f3a232345cc029d79b1018290505f5af
123ec7f7 — Sharlatan Hellseher 11 months ago 
gnu: python-zarr: Update to 2.18.7.

* gnu/packages/python-xyz.scm (python-zarr): Update to 2.18.7.
[native-inputs]: Remove python-pytest-doctestplus, python-sphinx,
python-sphinx-copybutton, python-sphinx-design, and
python-sphinx-issues.

Change-Id: I9db3ffe51bb9daba53b0759a4c6a5814ff285b83
e3c74605 — Nicolas Graves 11 months ago 
gnu: python-case: Deprecate package.

* gnu/packages/python-check.scm (python-case): Deprecate variable.
* gnu/packages/python-xyz.scm (python-kombu, python-billiard,
python-celery)[native-inputs]: Remove python-case.

Change-Id: I98d19e88aa5b8fa2b47f347a4d0c958d71096e4e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
35f2fd68 — Nicolas Graves 11 months ago 
gnu: python-case: Move to (gnu packages python-check).

* /gnu/packages/python-xyz.scm (python-case): Move from here…
* gnu/packages/python-check.scm (python-case): …to here.

Change-Id: I59379226031edbd4dc63c70f15725b488668d05c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2484aec8 — Nicolas Graves 11 months ago 
gnu: python-curtsies: Update to 0.4.3.

* gnu/packages/terminals.scm (python-curtsies): Update to 0.4.3.

Change-Id: I516134ed9a3a02be805498f76b552a8ab1e4411d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
4fda9a96 — Nicolas Graves 11 months ago 
gnu: python-pyte: Update to 0.8.2.

* gnu/packages/terminals.scm (python-pyte): Update to 0.8.2.

Change-Id: I6255a5598d86cb02f74c36c393e58d09f6a9b9a9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
3a3573fa — Nicolas Graves 11 months ago 
gnu: python-rchitect: Update to 0.4.8.

* gnu/packages/statistics.scm (python-rchitect): Update to 0.4.8.

Change-Id: If96584dc8ebec144ddb2ea9c0743b5ec36105abf
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
1679d707 — Nicolas Graves 11 months ago 
gnu: python-py2bit: Update to 0.3.3.

* gnu/packages/bioinformatics.scm (python-py2bit): Update to 0.3.3.
[native-inputs]: Add python-setuptools-scm.

Change-Id: Ib7e9d701595501e5da76288e5a8cae32e1dc6739
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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