~ruther/guix-local

51e8d1cb9521075c775ada2345fc3054a1f0cd2b — Sharlatan Hellseher 11 months ago e3a90b8
gnu: salmon: Update to 1.10.3, fix build.

* gnu/packages/bioinformatics.scm (salmon): Update to 1.10.3.
[inputs]: Update pufferfish sources.

Change-Id: Iba95cc2bc61bbd8bddd1c9b679c9705e260a1364
1 files changed, 4 insertions(+), 3 deletions(-)

M gnu/packages/bioinformatics.scm
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +4 -3
@@ 29,6 29,7 @@
;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
;;; Copyright © 2025 nomike Postmann <nomike@nomike.com>
;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2025 Sharlatan Hellseher <sharlatanus@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;


@@ 17034,7 17035,7 @@ The following file formats are supported:
(define-public salmon
  (package
    (name "salmon")
    (version "1.10.1")
    (version "1.10.3")
    (source (origin
              (method git-fetch)
              (uri (git-reference


@@ 17043,7 17044,7 @@ The following file formats are supported:
              (file-name (git-file-name name version))
              (sha256
               (base32
                "0grpcajxf2bch4b74zb66pdssda8yc7jvxj5ckaw0xvw1605rpcj"))
                "0vii7nlx0ddn62qniwx4abfj6ajwl3w6mizavpa0mkhpxnm06rqw"))
              (modules '((guix build utils)))
              (snippet
               ;; Delete bundled headers for eigen3.


@@ 17158,7 17159,7 @@ The following file formats are supported:
                        (file-name (git-file-name "pufferfish" version))
                        (sha256
                         (base32
                          "0fcv5rd2k4fabsg489sjfxgjisivhwk1w26gfc88rgpszdkcla36"))))))
                          "0h12h4wv7k3if1m6as7wvrbd7djm0zsg1vs0xn84bnrswwv5z2l3"))))))
    (home-page "https://github.com/COMBINE-lab/salmon")
    (synopsis "Quantification from RNA-seq reads using lightweight alignments")
    (description "Salmon is a program to produce highly-accurate,