gnu: r-terra: Update to 1.8-86.

* gnu/packages/cran.scm (r-terra): Update to 1.8-86.

Change-Id: I10b176bfab9f1b86131e3b3ca1fc254130daf8a6

gnu: r-lintr: Update to 3.3.0-1.

* gnu/packages/cran.scm (r-lintr): Update to 3.3.0-1.
[propagated-inputs]: Add r-xfun.

Change-Id: I564c566a561084b8228565a7b1867f9adc4751f9

gnu: r-sfheaders: Update to 0.4.5.

* gnu/packages/cran.scm (r-sfheaders): Update to 0.4.5.
[native-inputs]: Add r-shapes.

Change-Id: Ic2f829f40515691d20902b44dc133e0e00e8b989

gnu: r-sf: Update to 1.0-23.

* gnu/packages/cran.scm (r-sf): Update to 1.0-23.
[native-inputs]: Add r-spatstat-geom.

Change-Id: I9b94ecc95ea5861471abe98281111d69f5138b9e

gnu: r-doc2vec: Update to 0.2.2.

* gnu/packages/cran.scm (r-doc2vec): Update to 0.2.2.

Change-Id: I98095a1b9000c80a0e580a85ce83cf0da10972ce

gnu: r-word2vec: Update to 0.4.1.

* gnu/packages/cran.scm (r-word2vec): Update to 0.4.1.

Change-Id: Id51d8e7945076b30b2bbe18cc04b350d1ea87932

gnu: r-tsp: Update to 1.2.6.

* gnu/packages/cran.scm (r-tsp): Update to 1.2.6.

Change-Id: I854578c2c71b75d1b21e47d4ebaec3335d676e6e

gnu: r-geojsonsf: Update to 2.0.5.

* gnu/packages/cran.scm (r-geojsonsf): Update to 2.0.5.

Change-Id: I6fd9f427c77de13e1d4618efba964c0f9b3d7837

gnu: r-gensa: Update to 1.1.15.

* gnu/packages/cran.scm (r-gensa): Update to 1.1.15.

Change-Id: Ic292b26506718a06b7b21b1fcd77ac872d9b70ac

gnu: r-jsonify: Update to 1.2.3.

* gnu/packages/cran.scm (r-jsonify): Update to 1.2.3.
[properties]: Record updater-extra-native-inputs.
[native-inputs]: Remove r-knitr; add r-jsonlite.

Change-Id: I538a745e9f9ce55af7768402b6501e565adf178e

gnu: r-spatstat-model: Update to 3.5-0.

* gnu/packages/cran.scm (r-spatstat-model): Update to 3.5-0.
[native-inputs]: Remove r-random.

Change-Id: I296e4c8a2dc89901a9e653c4d131824342319426

gnu: r-ggtern: Update to 4.0.0.

* gnu/packages/cran.scm (r-ggtern): Update to 4.0.0.

Change-Id: I067268938ac7de00609ea70955c9e370a10b6882

gnu: r-cytoexplorer: Skip tests using with_mock.

* gnu/packages/bioinformatics.scm (r-cytoexplorer)[arguments]: Adjust phase
'skip-bad-tests.

Change-Id: I677fb4bdc709bd9ab463ab1e7c9c3c187ff76723

gnu: r-operator-tools: Adjust for testthat compatibility.

* gnu/packages/cran.scm (r-operator-tools)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I6d25d3cf049a294f8da11a8fbcd159cc227ae0ab

gnu: r-latex2exp: Skip bad test.

* gnu/packages/cran.scm (r-latex2exp)[arguments]: Add phase 'disable-bad-test.

Change-Id: I8cd2d0428d3434866185f8d1f5e6cfc1f2e93981

gnu: r-mi: Add missing inputs and skip bad test.

* gnu/packages/cran.scm (r-mi)[arguments]: Add phase 'skip-bad-tests.
[native-inputs]: Add r-betareg, r-survival, and r-truncnorm.

Change-Id: I662a6f8d43c03ae31254f8b6489791d59dce6d4b

gnu: r-ggvenn: Add missing test input.

* gnu/packages/cran.scm (r-ggvenn)[native-inputs]: Add r-testthat.

Change-Id: Id2ddbaf3f507d3113af7d77be866f7abd67a50e1

gnu: r-gchain: Update to 0.2.0-2.19f8bb9.

* gnu/packages/bioinformatics.scm (r-gchain): Update to 0.2.0-2.19f8bb9.
[arguments]: Add phase 'biostrings-compatibility; adjust phase
'skip-bad-tests.

Change-Id: Ia8719400b555625dd0067179ee3d142ee2d59ccc

gnu: r-ggmosaic: Make compatible with latest ggplot2.

* gnu/packages/cran.scm (r-ggmosaic)[arguments]: Add phase
'ggplot-compatibility.

Change-Id: I73200b7c0a588ea54deb39f729b15d422a94d4b1

gnu: r-abaenrichment: Adjust for testthat compatibility.

* gnu/packages/bioconductor.scm (r-abaenrichment)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I532339067402d2465b793bb16f6b137c425170ff