gnu: Remove ecl-april.

* gnu/packages/lisp-xyz.scm (ecl-april): Delete variable.

Change-Id: Ida8b53ce3e4f26a024fda692cd18132147a45ed5

gnu: elpa: Update to 2025.06.001.

* gnu/packages/maths.scm (elpa): Update to 2025.06.001.
[source]: Switch to ‘git-fetch’.
[native-inputs]: Add Autotools and Python; remove labels.
[inputs]: Remove labels.
[arguments]: Use gexps.
[properties]: New field.
(elpa-openmpi): Use ‘package/inherit’.
[inputs]: Remove labels.
[arguments]: Use gexps.

Change-Id: Ie12fa7242e15779e8dd3965822f7699f6078e39a
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #5475

gnu: prrte: Fix compilation.

The upgrade in 710d1984576a023878323e91b56f5c62b4a76271 turned out to be
broken.

* gnu/packages/parallel.scm (prrte)[arguments]: Remove now unnecessary
configure flags.  Add ‘adjust-pcc-link’ phase.
[native-inputs]: Add ‘pkg-config’.
[inputs]: Add ‘libnl’.
[outputs]: New field.

Fixes: guix/guix#4905
Reported-by: Andreas Enge <andreas@enge.fr>
Change-Id: I84f74cadfa05e84939f7db0b51ce4a1cb516d185
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #5391

gnu: openpmix: Simplify.

* gnu/packages/parallel.scm (openpmix)[source]: Use ‘modules’ field and adjust
‘snippet’ accordingly.
[arguments]: Remove now-useless configure flag.

Change-Id: I2ec33232021485a019a8f86818e2f540963d4338
Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: openpmix: Update to 6.0.0.

* gnu/packages/parallel.scm (openpmix): Update to 6.0.0.
(openpmix-4): New variable.
(slurm-minimal)[inputs]: Change ‘openpmix’ to ‘openpmix-4’.
(slurm-minimal-25.05)[inputs]: New field.

Change-Id: I043ef4545524e6757f47194e2c7f8793ccedf1b4
Signed-off-by: Ludovic Courtès <ludo@gnu.org>

tests: mail: Add Radicale test.

* gnu/tests/mail.scm
(%radicale-os): New variable.
(run-radicale-test): New function with basic tests.
(%test-radicale): New variable.

Change-Id: I4a4e093ca7ac2a20a575bcf38b6ff763edf67652
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #5361

services: radicale: add shepherd configuration action

* gnu/services/mail.scm (radicale-shepherd-service): add configuration
action.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: diod: Update to 1.1.0

* gnu/packages/plan9.scm (diod): Update to 1.1.0.
[source]<origin>: Add file-name.
[arguments]<#:phases>: Add 'patch-tests' phase.

Change-Id: I4f3ef885f3570589589034c8c24c29a648c6f66f
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #5425

gnu: wofi: Update to 1.5.3

* gnu/packages/xdisorg.scm (wofi): Update to 1.5.3.

Change-Id: I5b06f32e70fd7a8b92fca03495e00adc53af19d6
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #5435

tests: %test-nss-mdns: Fix test order.

Before this, the test failed because Avahi CLI utilities
exit with a non-zero status in case of a cache miss
(instead of blocking?).

* gnu/tests/avahi.scm (run-nss-mdns-test): Move the Avahi CLI tests
  after other name resolution tests.

Change-Id: I88ab03abf39cf24ee2ce763c719444ac65504cc2
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #4955

services: configuration: Generalize 'list-of-packages?'

* gnu/services/configuration.scm (list-of-packages?): Allow as well
tuples of a package and its output.
* gnu/home/services/sway.scm (list-of-packages): Remove duplicate.

Change-Id: I42622a29ac808c76928e9056dee9330d5e1b3f39
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #5470

gnu: flexbar: Update to 3.5.0.

* gnu/packages/bioinformatics.scm (flexbar): Update to 3.5.0.
[arguments]: Use G-Expressions.

Change-Id: If8a61ea506d30eebf29ae1116d7950fce497cb19

gnu: flatpak-kcm: Enable wayland.

* gnu/packages/kde-plasma.scm (flatpak-kcm)[inputs]: Add wayland.

Change-Id: Ib276309549ea87eaf91e86906866f3a5c96d6f7f

gnu: flatpak: Enable wayland security.

* gnu/packages/package-management.scm (flatpak)[arguments]<#:configure-flags>:
Add -Dwayland_security_context=enabled.
[inputs]: Add wayland.
[native-inputs]: Add wayland, wayland-protocols.

Change-Id: Idd2b28536750af6bf5d050c989a293f301ce1142

gnu: Remove embree-2.

* gnu/packages/graphics.scm (embree-2): Delete variable.

Change-Id: I1de940ac7e4e8dabafcb3dfad7edc1780c6205d4

gnu: ericw-tools: Update to 0.18.2-rc1.

* gnu/packages/game-development.scm (ericw-tools): Update to 0.18.2-rc1.
[inputs]: Remove embree-2; add embree.

Change-Id: Idbc5aa38adf1e39f538989612c0620097cf5434d

gnu: Fix source-url for some java packages.

For the apache updater to find the updates, the path-part of the source-url
must start with a single slash.

* gnu/packages/java.scm (java-apache-ivy,
  java-httpcomponents-httpcore)[source]: Fix url.

gnu: Add upstream-name to some java packages.

This will make the apache updater work.

* gnu/packages/java.scm Jjava-commons-bcel, java-commons-bsf,
  java-commons-dbcp, java-commons-jcs, java-commons-logging-minimal,
  java-commons-pool, java-httpcomponents-httpclient): [properies]: New field.

gnu: onetbb: Update to 2022.3.0.

* gnu/packages/oneapi.scm (onetbb): Update to 2022.3.0.

Change-Id: If883a90957fc3e01eb62bfc72c9d1359ba029e94

gnu: Add emacs-helm-comint.

* gnu/packages/emacs-xyz.scm (emacs-helm-comint): New variable.

Merges guix/guix#5290

Change-Id: I38fc5d3ec8eedb12f878125a99dedbc2ae742eeb