~ruther/guix-local

ref: 2fecbdbd82efda717d0e56101afcf41b79404a4f guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 107.4 KiB
1921b1de — Ricardo Wurmus 10 years ago 
gnu: Add deeptools.

* gnu/packages/bioinformatics.scm (deeptools): New variable.
f7283db3 — Ricardo Wurmus 10 years ago 
gnu: Add BioPerl.

* gnu/packages/bioinformatics.scm (bioperl-minimal): New variable.
c1670a81 — Ricardo Wurmus 10 years ago 
gnu: shogun: Move package to machine-learning.scm.

* gnu/packages/bioinformatics.scm (shogun): Move from here...
* gnu/packages/machine-learning.scm (shogun): ...to here.
b81cb1f2 — Ben Woodcroft 10 years ago 
gnu: bedtools: Add patch to fix compilation on 32 bit systems.

* gnu/packages/patches/bedtools-32bit-compilation.patch: New file.
* gnu/packages/bioinformatics.scm (bedtools)[source]: Add patch.
* gnu-system.am (dist_patch_DATA): Register patch.

Signed-off-by: Andreas Enge <andreas@enge.fr>
bd4af2f9 — Ben Woodcroft 10 years ago 
gnu: bedtools: Update to 2.24.0.

* gnu/packages/bioinformatics.scm (bedtools): Update to 2.24.0.
8dc797fa — Ben Woodcroft 10 years ago 
gnu: Add aragorn.

* gnu/packages/bioinformatics.scm (aragorn): New variable.
1b4e48d4 — Mark H Weaver 10 years ago 
Merge branch 'master' into core-updates
5ede5f2f — Mark H Weaver 10 years ago 
gnu: metabat: Minor tweaks.

* gnu/packages/bioinformatics.scm (metabat)[arguments]: Fix indentation in
  'fix-includes' phase.
  [license]: Fix misspelling.
8fd790eb — Ben Woodcroft 10 years ago 
gnu: Add metabat.

* gnu/packages/bioinformatics.scm (metabat): New variable.
9f04196d — Ricardo Wurmus 10 years ago 
gnu: preseq: Move "use-samtools-headers" phase.

* gnu/packages/bioinformatics.scm (preseq)[arguments]: Move phase
  "use-samtools-headers" after "enter-dir" phase.
56e373ef — Ricardo Wurmus 10 years ago 
gnu: Add preseq.

* gnu/packages/bioinformatics.scm (preseq): New variable.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: New file.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: New file.
* gnu-system.am (dist_patch_DATA): Add them.
5bdda30b — Ricardo Wurmus 10 years ago 
gnu: samtools: Install headers.

* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase
  "install-headers" to install header files.
795c01f3 — Ricardo Wurmus 10 years ago 
gnu: samtools: Update to 1.2.

* gnu/packages/bioinformatics.scm (samtools): Update to 1.2.
af860475 — Ben Woodcroft 10 years ago 
gnu: Add prodigal.

* gnu/packages/bioinformatics.scm (prodigal): New variable.
151714ca — Ricardo Wurmus 10 years ago 
gnu: shogun: Build with install RPATH.

* gnu/packages/bioinformatics.scm (shogun)[arguments]: Add configure flag to
  build with install RPATH.
c61fe02c — Ricardo Wurmus 10 years ago 
gnu: Add WarpedLMM.

* gnu/packages/bioinformatics.scm (python2-warpedlmm): New variable.
82c370de — Ricardo Wurmus 10 years ago 
gnu: Add Blast+.

* gnu/packages/bioinformatics.scm (blast+): New variable.
cc6ed477 — Ricardo Wurmus 10 years ago 
gnu: Add plink.

* gnu/packages/bioinformatics.scm (plink): New variable.
* gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
c684629f — Ben Woodcroft 10 years ago 
gnu: Add hmmer.

* gnu/packages/bioinformatics.scm (hmmer): New variable.
4758eaaa — Ricardo Wurmus 10 years ago 
gnu: star: Update to 2.4.2a.

* gnu/packages/bioinformatics.scm (star): Update to 2.4.2a.
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