packages: Use the target's system Guile when downloading patches.

* guix/packages.scm (patch-and-repack)[patch-inputs]: Pass SYSTEM in
  'package-source-derivation' call.

packages: 'package-transitive-supported-systems' accounts for indirect deps.

Reported by Andreas Enge <andreas@enge.fr>.

* guix/packages.scm (first-value): New macro.
  (package-transitive-supported-systems): Rewrite to traverse all the
  DAG rooted at PACKAGE.
* tests/packages.scm ("package-transitive-supported-systems"): Add 'd'
  and 'e', and test them.

packages: Implement grafts.

Thanks to Mark H. Weaver <mhw@netris.org> for insightful discussions
and suggestions.

* guix/packages.scm (<package>)[graft]: New field.
  (patch-and-repack): Invoke 'package-derivation' with #:graft? #f.
  (package-source-derivation): Likewise.  Do not use (%guile-for-build)
  in call to 'patch-and-repack', and we could end up using a grafted
  Guile.
  (expand-input): Likewise, also for 'package-cross-derivation' call.
  (package->bag): Add #:graft? parameter.  Honor it.  Use 'strip-append'
  instead of 'package-full-name'.
  (input-graft, input-cross-graft, bag-grafts, package-grafts): New
  procedures.
  (package-derivation, package-cross-derivation): Add #:graft? parameter
  and honor it.
* gnu/packages/bootstrap.scm (package-with-bootstrap-guile): Add
  recursive call on 'graft'.
* guix/build-system/gnu.scm (package-with-explicit-inputs,
  package-with-extra-configure-variable, static-package): Likewise.
  (gnu-build): Use the ungrafted Guile to avoid full rebuilds.
  (gnu-cross-build): Likewise.
* guix/build-system/cmake.scm (cmake-build): Likewise.
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Likewise.
* guix/build-system/perl.scm (perl-build): Likewise.
* guix/build-system/python.scm (python-build): Likewise.
* guix/build-system/ruby.scm (ruby-build): Likewise.
* guix/build-system/trivial.scm (guile-for-build): Likewise.
* tests/packages.scm ("package-derivation, direct graft",
  "package-cross-derivation, direct graft", "package-grafts,
  indirect grafts", "package-grafts, indirect grafts, cross",
  "package-grafts, indirect grafts, propagated inputs",
  "package-derivation, indirect grafts"): New tests.
  ("bag->derivation", "bag->derivation, cross-compilation"): Wrap in
  'parameterize'.
* doc/guix.texi (Security Updates): New node.
  (Invoking guix build): Document --no-graft.

packages: Add 'package-transitive-supported-systems'.

* guix/packages.scm (package-transitive-supported-systems): New procedure.
* tests/packages.scm ("package-transitive-supported-systems"): New test.
* build-aux/hydra/gnu-system.scm (package->job): Use it.

packages: Improve the package-to-derivation cache.

* guix/packages.scm (cache): Preserve the former values associated with
  PACKAGE.
  (cached): Bind SYSTEM in 'let', to prevent double evaluation.

packages: Gracefully print packages whose 'location' is #f.

* guix/packages.scm (<package> printer): Check whether LOC is #f.
* tests/packages.scm ("printer with location", "printer without
  location"): New tests.

hydra: Honor 'package-supported-systems'.

* guix/packages.scm (%supported-systems): New variable.
  (<package>)[platforms]: Rename to...
  [supported-systems]: ... this.  Change default to %SUPPORTED-SYSTEMS.
* build-aux/hydra/gnu-system.scm (job-name, package->job): New
  procedures, formerly in 'hydra-jobs'.  Honor 'package-supported-systems'.
  (hydra-jobs): Use them.

build-system: Bags record their system and target.

* guix/build-system.scm (<bag>)[system, target]: New fields.
  (make-bag): Add #:system parameter and pass it to LOWER.
* gnu/packages/bootstrap.scm (make-raw-bag): Initialize 'system' field.
* guix/build-system/cmake.scm (lower): Likewise.
* guix/build-system/perl.scm (lower): Likewise.
* guix/build-system/python.scm (lower): Likewise.
* guix/build-system/ruby.scm (lower): Likewise.
* guix/build-system/trivial.scm (lower): Likewise.
* guix/build-system/gnu.scm (lower): Initialize 'system' and 'target'
  fields.
* guix/packages.scm (bag->derivation, bag->cross-derivation): New
  procedures.
  (package-derivation, package-cross-derivation): Use 'bag->derivation'.
* tests/packages.scm ("search paths"): Initialize 'system' and 'target'
  fields.
  ("package->bag", "package->bag, cross-compilation", "bag->derivation",
  "bag->derivation, cross-compilation"): New tests.

build-system: Introduce "bags" as an intermediate representation.

* guix/build-system.scm (<build-system>)[build, cross-build]: Remove.
  [lower]: New field.
  (<bag>): New record type.
  (make-bag): New procedure.
* guix/packages.scm (bag-transitive-inputs, bag-transitive-build-inputs,
  bag-transitive-host-inputs, bag-transitive-target-inputs,
  package->bag): New procedures.
  (package-derivation): Use it; use the bag, apply its build procedure,
  etc.
  (package-cross-derivation): Likewise.
* gnu/packages/bootstrap.scm (raw-build, make-raw-bag): New procedure.
  (%bootstrap-guile): Use them.
* guix/build-system/trivial.scm (lower): New procedure.
  (trivial-build, trivial-cross-build): Remove 'source' parameter.  Pass
  INPUTS as is.
  (trivial-build-system): Adjust accordingly.
* guix/build-system/gnu.scm (%store, inputs-search-paths,
  standard-search-paths, expand-inputs, standard-inputs): Remove.
  (gnu-lower): New procedure.
  (gnu-build): Remove 'source' and #:implicit-inputs? parameters.
  Remove 'implicit-inputs' and 'implicit-search-paths' variables.  Get
  the source from INPUT-DRVS.
  (gnu-cross-build): Likewise.
  (standard-cross-packages): Remove call to 'standard-packages'.
  (standard-cross-inputs, standard-cross-search-paths): Remove.
  (gnu-build-system): Remove 'build' and 'cross-build'; add 'lower'.
* guix/build-system/cmake.scm (lower): New procedure.
  (cmake-build): Remove 'source' and #:cmake parameters.  Use INPUTS and
  SEARCH-PATHS as is.  Get the source from INPUTS.
* guix/build-system/perl.scm: Likewise.
* guix/build-system/python.scm: Likewise.
* guix/build-system/ruby.scm: Likewise.
* gnu/packages/cross-base.scm (cross-gcc): Change "cross-linux-headers"
  to "linux-headers".
  (cross-libc)[xlinux-headers]: Pass #:implicit-cross-inputs? #f.
  Likewise.  In 'propagated-inputs', change "cross-linux-headers" to
  "linux-headers".
* guix/git-download.scm (git-fetch): Use 'standard-packages' instead of
  'standard-inputs'.
* tests/builders.scm ("gnu-build-system"): Remove use of
  'build-system-builder'.
  ("gnu-build"): Remove 'source' and #:implicit-inputs? arguments to
  'gnu-build'.
* tests/packages.scm ("search paths"): Adjust to new build system API.
  ("package-cross-derivation, no cross builder"): Likewise.
* doc/guix.texi (Build Systems): Add paragraph on bags.

Merge branch 'bash-cve-2014-6271'

packages: Allow use of origins as patches.

* guix/packages.scm (patch-and-repack)[patch-inputs]: Use 'add-to-store'
  only if the PATCH is a file name, and 'package-source-derivation' if
  PATCH is an origin.

Merge branch 'master' into core-updates

Conflicts:
	gnu/packages/base.scm

gnu: Split (gnu packages base), adding (gnu packages commencement).

* gnu/packages/base.scm (gnu-make-boot0, diffutils-boot0,
  findutils-boot0, %boot0-inputs, nix-system->gnu-triplet, boot-triplet,
  binutils-boot0, gcc-boot0, perl-boot0, linux-libre-headers-boot0,
  texinfo-boot0, %boot1-inputs, glibc-final-with-bootstrap-bash,
  cross-gcc-wrapper, static-bash-for-glibc, glibc-final,
  gcc-boot0-wrapped, %boot2-inputs, binutils-final, libstdc++,
  gcc-final, ld-wrapper-boot3, %boot3-inputs, bash-final, %boot4-inputs,
  guile-final, gnu-make-final, ld-wrapper, coreutils-final, grep-final,
  %boot5-inputs, %final-inputs, canonical-package, gcc-toolchain,
  gcc-toolchain-4.8, gcc-toolchain-4.9): Move to...
* gnu/packages/commencement.scm: ... here.  New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* build-aux/check-final-inputs-self-contained.scm: Adjust accordingly.
* gnu/packages/cross-base.scm: Likewise.
* gnu/packages/make-bootstrap.scm: Likewise.
* guix/build-system/cmake.scm (cmake-build): Likewise.
* guix/build-system/gnu.scm (standard-packages, gnu-build,
  gnu-cross-build): Likewise.
* guix/build-system/perl.scm (perl-build): Likewise.
* guix/build-system/python.scm (python-build): Likewise.
* guix/build-system/trivial.scm (guile-for-build): Likewise.
* guix/download.scm (url-fetch): Likewise.
* guix/gexp.scm (default-guile): Likewise.
* guix/git-download.scm (git-fetch): Likewise.
* guix/monads.scm (run-with-store): Likewise.
* guix/packages.scm (default-guile): Likewise.
* guix/scripts/package.scm (guix-package): Likewise.
* guix/scripts/refresh.scm: Likewise.
* guix/svn-download.scm (svn-fetch): Likewise.
* tests/builders.scm (%bootstrap-inputs, %bootstrap-search-paths):
  Likewise.
* tests/packages.scm ("GNU Make, bootstrap"): Likewise.
* tests/guix-package.sh: Likewise.
* gnu/services/base.scm: Use 'canonical-package' instead of xxx-final.
* gnu/services/xorg.scm: Likewise.
* gnu/system/vm.scm: Likewise.
* guix/scripts/pull.scm (guix-pull): Likewise.

Merge branch 'master' into core-updates

Add comments about global memoization.

* guix/build-system/gnu.scm (standard-inputs): Add comment about
  misplaced memoization.
* guix/packages.scm (cache): Likewise.

guix: refresh: Add --list-dependent option.

* guix/packages.scm (package-direct-inputs): New procedure.
* gnu/packages.scm (vhash-refq, package-direct-dependents)
  (package-transitive-dependents, package-covering-dependents): New procedures.
* guix/scripts/refresh.scm (%options, show-help, guix-refresh): Add
  --list-dependent option.
* doc/guix.texi (Invoking guix refresh): Document '--list-dependent' option.

packages: Add printer for <origin>.

* guix/packages.scm (print-origin): New procedure.
  (<origin>): Add it as record type printer.

packages: Correctly handle patching for inputs with no extension.

Reported by Manolis Ragkousis <manolis837@gmail.com>.

* guix/packages.scm (patch-and-repack)[numeric-extension?]: Handle
  FILE-NAME with no extension.

Merge branch 'core-updates'

Change default store values from /nix/store to /gnu/store.

* gnu/packages/ld-wrapper.scm (%store-directory): Change the default to
  /gnu/store.
* guix/build/utils.scm (%store-directory): New procedure.
  (remove-store-references): Use it for the default value of 'store'.
* guix/packages.scm (patch-and-repack)[builder]: Change default store to
  /gnu/store.