gnu: python-netcdf4: Update to 1.6.2.

* gnu/packages/python-xyz.scm (python-netcdf4): Update to 1.6.2.
  [build-system]: Use pyproject.
  [arguments] <phases>: Remove 'configure-locations; add
  set-configure-flags; use custom 'check.
  [inputs]: Remove hdf4; add zlib.
  [native-inputs]: Remove python-cython; add python-cython-3,
  python-setuptools, and python-wheel.

Change-Id: Ie4e13538c2e5ad8d06055b7c3a4692c26c03e8da

gnu: python-netcdf4: Use G-expressions.

* gnu/packages/python-xyz.scm (python-netcdf4): Use G-expressions.

Change-Id: Idba0da37c8c0d7e22a2a5cf784bb8a7c9b80ba12

gnu: python-cython-next: Fix build on i686.

* gnu/packages/python-xyz.scm (python-cython-3)[native-inputs]: Use gcc-11
when target-x86-32?

gnu: python-find-libpython: Update to 0.4.1.

* gnu/packages/python-xyz.scm (python-find-libpython): Update to 0.4.1.

Change-Id: I1979d8e3e39bef589522b674b213b91901d465ab
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-xmlsec: Update to 1.3.16.

* gnu/packages/python-xyz.scm (python-xmlsec): Update to 1.3.16.
[home-page]: Follow redirect.

Change-Id: Ib5e95ec24c98156d614f1a903c0d9fe6c11a3cfa

gnu: python-shapely: Update to 2.1.1.

* gnu/packages/python-xyz.scm (python-shapely): Update to 2.1.1.

Change-Id: I535568979f8578186c64a22437032d0890d873f6

gnu: python-fonttools: Use python-lxml-4.9

* gnu/packages/python-xyz.scm (python-fonttools)[propagated-inputs]: Use
python-lxml-4.9 replace python-lxml.

Change-Id: I27fbd33865d4e7177671203e6f4816b19fc59fdf

gnu: python-libarchive-c: Update to 5.2.

* gnu/packages/python-xyz.scm (python-libarchive-c): Update to 5.2.
[source]: Adjust pyppi name.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Remove python-mock; add python-setuptools and python-wheel.
[arguments]: Use G-expressions.

Change-Id: I9a5e30c7b18e95e668713cd6bef4aed1ad7a0602

gnu: python-h5py: Fix build with gcc-14.

* gnu/packages/python-xyz.scm (python-h5py)[arguments]: Add phase
"relax-gcc-14-strictness".

Change-Id: Ib68eb41305d075069926323727fe35ca65fd2873

gnu: python-cython-next: Build with gcc-13.

Using gcc-14 produces

    Compiler output for module e_switch_transform:
    e_switch_transform.c: In function ‘__pyx_pf_18e_switch_transform_is_not_one’:
    e_switch_transform.c:2283:5: error: duplicate case value
     2283 |     case 1+0:
          |     ^~~~
    e_switch_transform.c:2282:5: note: previously used here
     2282 |     case 1:
          |     ^~~~

* gnu/packages/python-xyz.scm (python-cython-3)[native-inputs]: Add gcc-13.

Change-Id: Iaed502e4c105bb1229345288ec2f203453f65acc

gnu: python-datrie: Fix build with gcc-14.

* gnu/packages/python-xyz.scm (python-datrie)[arguments]: New field to relax
gcc-14's strictness.

Change-Id: I44185ba3da9f57326179bd44394d5508da6dd62d

gnu: python-numpy: Update to 1.26.4 and fix build with gcc-14.

* gnu/packages/patches/python-numpy-gcc-14.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python-xyz.scm (python-numpy): Update to 1.26.4 and use it.
[arguments]: Add phase "relax-gcc-14-strictness".  In phase "check", disable
more tests.
[native-inputs]: Add gcc-14 before gfortran so that gfortran's fenv.h include
doesn't win and break the build.

Change-Id: I9c8053c66f21521371a85107ef1864a1c0d19ad4

gnu: Add python-pyclibrary.

* gnu/packages/python-xyz.scm (python-pyclibrary): New variable.

Change-Id: Ib02029f6ee122dd833b4c4f2b83c1e9a82237aa8
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-ioctl-opt.

* gnu/packages/python-xyz.scm (python-ioctl-opt): New variable.

Change-Id: I5eef30444528fa722a12268a58c956993dcd47d1
Signed-off-by: Andreas Enge <andreas@enge.fr>

gnu: python-bokeh: Update to 3.7.3.

* gnu/packages/python-xyz.scm (python-bokeh): Update to 3.7.3.
[arguments] <tests?>: Disable for now.
<phases>: Add 'set-version.
[propagated-inputs]: Remove python-typing-extensions; add
python-contourpy, python-narwhals, python-pandas, and
python-xyzservices.

Change-Id: I0f2666a5559a1ec6ef5c113d03c1fe62337fac59

gnu: python-contourpy: Update to 1.3.2.

* gnu/packages/python-xyz.scm (python-contourpy): Update to 1.3.2.

Change-Id: I3e8517805d1c45f8738f6326c484604315f6b1f3

gnu: python-dask: Update to 2024.12.1.

* gnu/packages/python-xyz.scm (python-dask): Update to 2024.12.1.

Change-Id: I776e9dd3d4a12d33e89e4d48a5e637cb9d6f465e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-av: Update to 14.4.0.

* gnu/packages/python-xyz.scm (python-av): Update to 14.4.0.
  [arguments]{test-flags}: Update them.
  [native-inputs]: Replace python-setuptools by python-setuptools-next.
  [inputs]: Use ffmpeg-7.

Change-Id: Ic860d50b1327de4f74ba86e841632aeffef67079
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-av: Download testdata to support tests.

* gnu/packages/python-xyz.scm (python-av-testdata): New variable.
  (python-av)[arguments]{test-flags}: Adapt field.
  {phases}: Add phase 'pre-check.

Change-Id: I0d84aafc05a5b1aec6b3905f99783fea2d45a676
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-av: Simplify test exclusion list.

* gnu/packages/python-xyz.scm (python-av) [arguments] <test-flags>:
Rewrite a long list with STRING-JOIN, sort skipped tests alphabetically.

Change-Id: I7aa07504f45087dcc3c2f7ea8c65ec972f6fc62f