@@ 4573,6 4573,40 @@ observationally-derived galaxy merger catalogs.")
satellite.")
(license license:bsd-3)))
+(define-public python-jplephem
+ (package
+ (name "python-jplephem")
+ (version "2.22")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "jplephem" version))
+ (sha256
+ (base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python" "-m" "unittest" "discover" "-s" "test")))))))
+ (native-inputs
+ (list python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-numpy))
+ (home-page "https://github.com/brandon-rhodes/python-jplephem")
+ (synopsis "Python version of NASA DE4xx ephemerides")
+ (description
+ "@code{skyfield} computes positions for the stars, planets, and
+satellites in orbit around the Earth. Its results should agree with the
+positions generated by the United States Naval Observatory and their
+Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or
+milliarcsecond).")
+ (license license:expat)))
+
(define-public python-jwst
(package
(name "python-jwst")
@@ 5325,6 5359,131 @@ profiles. In particular, PetroFit includes tools for performing accurate
photometry, segmentations, Petrosian profiling, and Sérsic fitting.")
(license license:bsd-3)))
+(define-public python-pint-pulsar
+ (package
+ (name "python-pint-pulsar")
+ (version "1.1.3")
+ (source
+ (origin
+ (method git-fetch) ; no tests data in the PyPI tarball
+ (uri (git-reference
+ (url "https://github.com/nanograv/PINT")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0n66z7v30q1981hx4q5vy3mibrh453gak8dd938038r5mwddya3f"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "-k" (string-join
+ ;; Tests failing with assertion on not correct precision
+ ;; or missing data files.
+ (list "not test_astropy_observatory"
+ "test_copy_wideband_fitter_object"
+ "test_IERS_B_builtin_agree_with_IERS_Auto_dX"
+ "test_astropy_observatory"
+ "test_time_construction_jds_exact[tdb]"
+ "test_copy_toa_object"
+ "test_copy_residuals"
+ "test_copy_fitter_object")
+ " and not ")
+ ;; XXX: The most of the tests require additional data, select
+ ;; files where they may run without it and check how to enable
+ ;; more.
+ "tests/test_Galactic.py"
+ "tests/test_all_component_and_model_builder.py"
+ "tests/test_astrometry.py"
+ "tests/test_astropy_observatory.py"
+ "tests/test_astropy_times.py"
+ "tests/test_astropy_version.py"
+ "tests/test_binary_generic.py"
+ "tests/test_binconvert.py"
+ "tests/test_compare.py"
+ "tests/test_compare_model.py"
+ "tests/test_compare_model_ecl_vs_icrs.py"
+ "tests/test_convert_parfile.py"
+ "tests/test_copy.py"
+ "tests/test_covariance_matrix.py"
+ "tests/test_datafiles.py"
+ "tests/test_derived_quantities.py"
+ "tests/test_derivedparams.py"
+ "tests/test_dmxrange_add_sub.py"
+ "tests/test_erfautils.py"
+ "tests/test_eventstats.py"
+ "tests/test_funcpar.py"
+ "tests/test_kepler.py"
+ "tests/test_leapsec.py"
+ "tests/test_model_manual.py"
+ "tests/test_numpy.py"
+ "tests/test_observatory_envar.py"
+ "tests/test_observatory_metadata.py"
+ "tests/test_parfile.py"
+ "tests/test_parunits.py"
+ "tests/test_pb.py"
+ "tests/test_phase.py"
+ "tests/test_pickle.py"
+ "tests/test_plk_widget.py"
+ "tests/test_plot_utils.py"
+ "tests/test_plrednoise.py"
+ "tests/test_pmtransform_units.py"
+ "tests/test_precision.py"
+ "tests/test_prefix_param_inheritance.py"
+ "tests/test_priors.py"
+ "tests/test_process_parfile.py"
+ "tests/test_pulsar_mjd.py"
+ "tests/test_pulsar_position.py"
+ "tests/test_reduced_precision.py"
+ "tests/test_satobs.py"
+ "tests/test_t2binary2pint.py"
+ "tests/test_tcb2tdb.py"
+ "tests/test_templates.py"
+ "tests/test_variety_parfiles.py"
+ "tests/test_version.py")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-deprecated-scripts
+ ;; ImportError: cannot import name 'CompositeMCMCFitter' from
+ ;; 'pint.mcmc_fitter'.
+ ;;
+ ;; Removed in 1.1.3: Broken fitter class `CompositeMCMCFitter`
+ ;; (this fitter was added seemingly to deal with combined radio and
+ ;; high-energy datasets, but has since been broken for a while.)
+ (lambda _
+ (substitute* "pyproject.toml"
+ (("event_optimize_multiple.*") "")))))))
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-versioneer
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-corner
+ python-emcee
+ python-jplephem
+ python-loguru
+ python-matplotlib
+ python-nestle
+ python-numdifftools
+ python-numpy
+ python-pyerfa
+ python-scipy
+ python-uncertainties))
+ (home-page "https://github.com/nanograv/PINT")
+ (synopsis "Software for high-precision pulsar timing")
+ (description
+ "PINT is not TEMPO3 - package providing a Pulsar Timing, written in
+Python from scratch.
+Features:
+@itemize
+@item a robust system to produce high-precision timing results that is
+completely independent of TEMPO and Tempo2
+@item a system that is easy to extend and modify due to a good design
+and the use of a modern programming language, techniques, and libraries
+@end itemize")
+ (license license:bsd-3)))
+
(define-public python-pixell
(package
(name "python-pixell")
@@ 5588,6 5747,63 @@ Features:
@end itemize")
(license license:expat)))
+(define-public python-pysat
+ (package
+ (name "python-pysat")
+ (version "3.2.2")
+ (source
+ (origin
+ (method git-fetch) ; no tests data in the PyPI tarball
+ (uri (git-reference
+ (url "https://github.com/pysat/pysat")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0gm71zafigwc94s37wqyl86yjabpq6wx9izwxag74wg1ynhqyvf0"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "--durations=10" ; report 10 slowest tests
+ ;; Tests require pysatSpaceWeather which is not packed yet.
+ "--ignore=pysat/tests/test_utils_files.py"
+ "-k" "not test_from_os")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'pre-check
+ (lambda _
+ ;; Do not run test coverage.
+ (substitute* "pyproject.toml"
+ ((".*addopts.*cov.*") ""))
+ ;; No such file or directory: '/homeless-shelter/.pysat'
+ (setenv "HOME" "/tmp")
+ (mkdir "pysatData")
+ (invoke "python" "-c"
+ "import pysat; pysat.params['data_dirs'] = 'pysatData'"))))))
+ (native-inputs
+ (list python-pytest
+ python-pytest-xdist
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-dask
+ python-netcdf4
+ python-numpy
+ python-pandas
+ python-portalocker
+ python-scipy
+ python-toolz
+ python-xarray))
+ (home-page "https://github.com/pysat/pysat")
+ (synopsis "Supports science analysis across disparate data platforms")
+ (description
+ "The Python Satellite Data Analysis Toolkit (pysat) provides a simple and
+flexible interface for robust data analysis from beginning to end - including
+downloading, loading, cleaning, managing, processing, and analyzing
+data. Pysat's plug-in design allows analysis support for any data, including
+user provided data sets.")
+ (license license:bsd-3)))
+
(define-public python-pysiril
(package
(name "python-pysiril")
@@ 5954,6 6170,36 @@ observations from the Nancy Grace Roman Space Telescope.")
(list python-numpy))
(synopsis "Python library for Source Extraction and Photometry")))
+(define-public python-sep-pjw
+ (package
+ (name "python-sep-pjw")
+ (version "1.3.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "sep_pjw" version))
+ (sha256
+ (base32 "0lhxfq1acc6qc8nszfdrpwq6dizaypz3b6frknfv5qm59mb488r0"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags #~(list "test.py")))
+ (native-inputs
+ (list python-cython
+ python-pytest
+ python-setuptools
+ python-setuptools-scm-next
+ python-wheel))
+ (propagated-inputs
+ (list python-numpy
+ python-sep))
+ (home-page "https://github.com/PJ-Watson/sep-pjw")
+ (synopsis "Alternative fork of SEP library")
+ (description
+ "This package provides an alternative maintained fork of SEP python
+library with bug fixtures.")
+ (license (list license:expat license:lgpl3+ license:bsd-3))))
+
(define-public python-sirilic
(package
(name "python-sirilic")
@@ 6391,40 6637,6 @@ instruments.")
(license (list license:bsd-3 ; licenses/LICENSE.rst, same as python-astropy
license:expat)))) ; licenses/KOSMOS_LICENSE
-(define-public python-jplephem
- (package
- (name "python-jplephem")
- (version "2.22")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "jplephem" version))
- (sha256
- (base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "python" "-m" "unittest" "discover" "-s" "test")))))))
- (native-inputs
- (list python-setuptools
- python-wheel))
- (propagated-inputs
- (list python-numpy))
- (home-page "https://github.com/brandon-rhodes/python-jplephem")
- (synopsis "Python version of NASA DE4xx ephemerides")
- (description
- "@code{skyfield} computes positions for the stars, planets, and
-satellites in orbit around the Earth. Its results should agree with the
-positions generated by the United States Naval Observatory and their
-Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or
-milliarcsecond).")
- (license license:expat)))
-
(define-public python-photutils
(package
(name "python-photutils")
@@ 7393,63 7605,6 @@ astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
N-Chilada and RAMSES AMR outputs.")
(license license:gpl3+)))
-(define-public python-pysat
- (package
- (name "python-pysat")
- (version "3.2.2")
- (source
- (origin
- (method git-fetch) ; no tests data in the PyPI tarball
- (uri (git-reference
- (url "https://github.com/pysat/pysat")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0gm71zafigwc94s37wqyl86yjabpq6wx9izwxag74wg1ynhqyvf0"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list "--durations=10" ; report 10 slowest tests
- ;; Tests require pysatSpaceWeather which is not packed yet.
- "--ignore=pysat/tests/test_utils_files.py"
- "-k" "not test_from_os")
- #:phases
- #~(modify-phases %standard-phases
- (add-before 'check 'pre-check
- (lambda _
- ;; Do not run test coverage.
- (substitute* "pyproject.toml"
- ((".*addopts.*cov.*") ""))
- ;; No such file or directory: '/homeless-shelter/.pysat'
- (setenv "HOME" "/tmp")
- (mkdir "pysatData")
- (invoke "python" "-c"
- "import pysat; pysat.params['data_dirs'] = 'pysatData'"))))))
- (native-inputs
- (list python-pytest
- python-pytest-xdist
- python-setuptools
- python-wheel))
- (propagated-inputs
- (list python-dask
- python-netcdf4
- python-numpy
- python-pandas
- python-portalocker
- python-scipy
- python-toolz
- python-xarray))
- (home-page "https://github.com/pysat/pysat")
- (synopsis "Supports science analysis across disparate data platforms")
- (description
- "The Python Satellite Data Analysis Toolkit (pysat) provides a simple and
-flexible interface for robust data analysis from beginning to end - including
-downloading, loading, cleaning, managing, processing, and analyzing
-data. Pysat's plug-in design allows analysis support for any data, including
-user provided data sets.")
- (license license:bsd-3)))
-
(define-public python-pysiaf
(package
(name "python-pysiaf")
@@ 7607,36 7762,6 @@ well as ephemerides services
@end itemize")
(license license:bsd-3)))
-(define-public python-sep-pjw
- (package
- (name "python-sep-pjw")
- (version "1.3.8")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "sep_pjw" version))
- (sha256
- (base32 "0lhxfq1acc6qc8nszfdrpwq6dizaypz3b6frknfv5qm59mb488r0"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags #~(list "test.py")))
- (native-inputs
- (list python-cython
- python-pytest
- python-setuptools
- python-setuptools-scm-next
- python-wheel))
- (propagated-inputs
- (list python-numpy
- python-sep))
- (home-page "https://github.com/PJ-Watson/sep-pjw")
- (synopsis "Alternative fork of SEP library")
- (description
- "This package provides an alternative maintained fork of SEP python
-library with bug fixtures.")
- (license (list license:expat license:lgpl3+ license:bsd-3))))
-
(define-public python-asdf-standard
(package
(name "python-asdf-standard")
@@ 7779,131 7904,6 @@ System (WCS) tags. Users should not need to install this directly; instead,
install an implementation package such as gwcs.")
(license license:bsd-3))))
-(define-public python-pint-pulsar
- (package
- (name "python-pint-pulsar")
- (version "1.1.3")
- (source
- (origin
- (method git-fetch) ; no tests data in the PyPI tarball
- (uri (git-reference
- (url "https://github.com/nanograv/PINT")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0n66z7v30q1981hx4q5vy3mibrh453gak8dd938038r5mwddya3f"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list "-k" (string-join
- ;; Tests failing with assertion on not correct precision
- ;; or missing data files.
- (list "not test_astropy_observatory"
- "test_copy_wideband_fitter_object"
- "test_IERS_B_builtin_agree_with_IERS_Auto_dX"
- "test_astropy_observatory"
- "test_time_construction_jds_exact[tdb]"
- "test_copy_toa_object"
- "test_copy_residuals"
- "test_copy_fitter_object")
- " and not ")
- ;; XXX: The most of the tests require additional data, select
- ;; files where they may run without it and check how to enable
- ;; more.
- "tests/test_Galactic.py"
- "tests/test_all_component_and_model_builder.py"
- "tests/test_astrometry.py"
- "tests/test_astropy_observatory.py"
- "tests/test_astropy_times.py"
- "tests/test_astropy_version.py"
- "tests/test_binary_generic.py"
- "tests/test_binconvert.py"
- "tests/test_compare.py"
- "tests/test_compare_model.py"
- "tests/test_compare_model_ecl_vs_icrs.py"
- "tests/test_convert_parfile.py"
- "tests/test_copy.py"
- "tests/test_covariance_matrix.py"
- "tests/test_datafiles.py"
- "tests/test_derived_quantities.py"
- "tests/test_derivedparams.py"
- "tests/test_dmxrange_add_sub.py"
- "tests/test_erfautils.py"
- "tests/test_eventstats.py"
- "tests/test_funcpar.py"
- "tests/test_kepler.py"
- "tests/test_leapsec.py"
- "tests/test_model_manual.py"
- "tests/test_numpy.py"
- "tests/test_observatory_envar.py"
- "tests/test_observatory_metadata.py"
- "tests/test_parfile.py"
- "tests/test_parunits.py"
- "tests/test_pb.py"
- "tests/test_phase.py"
- "tests/test_pickle.py"
- "tests/test_plk_widget.py"
- "tests/test_plot_utils.py"
- "tests/test_plrednoise.py"
- "tests/test_pmtransform_units.py"
- "tests/test_precision.py"
- "tests/test_prefix_param_inheritance.py"
- "tests/test_priors.py"
- "tests/test_process_parfile.py"
- "tests/test_pulsar_mjd.py"
- "tests/test_pulsar_position.py"
- "tests/test_reduced_precision.py"
- "tests/test_satobs.py"
- "tests/test_t2binary2pint.py"
- "tests/test_tcb2tdb.py"
- "tests/test_templates.py"
- "tests/test_variety_parfiles.py"
- "tests/test_version.py")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'remove-deprecated-scripts
- ;; ImportError: cannot import name 'CompositeMCMCFitter' from
- ;; 'pint.mcmc_fitter'.
- ;;
- ;; Removed in 1.1.3: Broken fitter class `CompositeMCMCFitter`
- ;; (this fitter was added seemingly to deal with combined radio and
- ;; high-energy datasets, but has since been broken for a while.)
- (lambda _
- (substitute* "pyproject.toml"
- (("event_optimize_multiple.*") "")))))))
- (native-inputs
- (list python-pytest
- python-setuptools
- python-versioneer
- python-wheel))
- (propagated-inputs
- (list python-astropy
- python-corner
- python-emcee
- python-jplephem
- python-loguru
- python-matplotlib
- python-nestle
- python-numdifftools
- python-numpy
- python-pyerfa
- python-scipy
- python-uncertainties))
- (home-page "https://github.com/nanograv/PINT")
- (synopsis "Software for high-precision pulsar timing")
- (description
- "PINT is not TEMPO3 - package providing a Pulsar Timing, written in
-Python from scratch.
-Features:
-@itemize
-@item a robust system to produce high-precision timing results that is
-completely independent of TEMPO and Tempo2
-@item a system that is easy to extend and modify due to a good design
-and the use of a modern programming language, techniques, and libraries
-@end itemize")
- (license license:bsd-3)))
-
(define-public python-rad
(package
(name "python-rad")