@@ 265,6 265,108 @@ can be imported from spreadsheets, text files and database sources and it can
be output in text, PostScript, PDF or HTML.")
(license license:gpl3+)))
+(define-public python-altair
+ (package
+ (name "python-altair")
+ (version "5.3.0")
+ (source (origin
+ (method git-fetch) ; no tests in PyPI
+ (uri (git-reference
+ (url "https://github.com/altair-viz/altair")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1lx3pkphi36pljns6jjxhyn9fbrana8f1y6gcg4yca48nvwlfssl"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:test-flags
+ ;; XXX: This test file requires hard to package python-anywidgets.
+ #~(list "--ignore=tests/test_jupyter_chart.py"
+ "-k" (string-join
+ (list
+ ;; these tests open an external connection.
+ "not test_from_and_to_json_roundtrip"
+ "test_render_examples_to_chart"
+ ;; introduces a circular dependency on altair-viewer.
+ "not test_save_html"
+ ;; these tests require the vl-convert vega compiler
+ "test_vegalite_compiler"
+ "test_to_dict_with_format_vega"
+ "test_to_json_with_format_vega"
+ "test_to_url"
+ "test_renderer_with_none_embed_options"
+ "test_jupyter_renderer_mimetype")
+ " and not "))))
+ (propagated-inputs (list python-jinja2
+ python-jsonschema
+ python-numpy
+ python-pandas
+ python-setuptools
+ python-toolz
+ python-typing-extensions))
+ (native-inputs (list python-black
+ python-hatchling
+ python-ipython
+ python-pytest
+ python-vega-datasets))
+ (home-page "https://altair-viz.github.io/")
+ (synopsis "Declarative statistical visualization library for Python")
+ (description
+ "Vega-Altair is a declarative statistical visualization library for Python.")
+ (license license:expat)))
+
+(define-public python-arviz
+ (package
+ (name "python-arviz")
+ (version "0.21.0")
+ (source (origin
+ (method git-fetch) ; PyPI misses some test files
+ (uri (git-reference
+ (url "https://github.com/arviz-devs/arviz")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02bqpl61gzn65vhwspi6gx9ln2wlwh8xm418i8vhmls44rvszcxf"))))
+ (build-system pyproject-build-system)
+ (arguments
+ ;; FIXME: matplotlib tests fail because of the "--save" test flag.
+ (list #:test-flags #~'("--ignore"
+ "arviz/tests/base_tests/test_plots_matplotlib.py")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-radon
+ (lambda _
+ (delete-file
+ ;; This dataset is loaded remotely, it's not supposed to
+ ;; be copied locally.
+ "arviz/data/example_data/code/radon/radon.json")))
+ (add-before 'check 'write-permission
+ (lambda _
+ ;; 3 tests require write permission.
+ (setenv "HOME" "/tmp"))))))
+ (native-inputs (list python-cloudpickle python-pytest))
+ (propagated-inputs (list python-dm-tree
+ python-h5netcdf
+ python-matplotlib
+ python-numpy
+ python-packaging
+ python-pandas
+ python-scipy
+ python-typing-extensions
+ python-xarray
+ python-xarray-einstats
+ python-setuptools
+ python-wheel))
+ (home-page "https://github.com/arviz-devs/arviz")
+ (synopsis "Exploratory analysis of Bayesian models")
+ (description
+ "ArviZ is a Python package for exploratory analysis of Bayesian models.
+It includes functions for posterior analysis, data storage, model checking,
+comparison and diagnostics.")
+ (license license:asl2.0)))
+
;; Update this package together with the set of recommended packages: r-boot,
;; r-class, r-cluster, r-codetools, r-foreign, r-kernsmooth, r-lattice,
;; r-mass, r-matrix, r-mgcv, r-nlme, r-nnet, r-rpart, r-spatial, r-survival.
@@ 908,57 1010,6 @@ Keizer et al. (2013) <doi:10.1038/psp.2013.24>, and Jonsson et al.
and Vega-Lite examples.")
(license license:expat)))
-(define-public python-altair
- (package
- (name "python-altair")
- (version "5.3.0")
- (source (origin
- (method git-fetch) ; no tests in PyPI
- (uri (git-reference
- (url "https://github.com/altair-viz/altair")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1lx3pkphi36pljns6jjxhyn9fbrana8f1y6gcg4yca48nvwlfssl"))))
- (build-system pyproject-build-system)
- (arguments
- (list #:test-flags
- ;; XXX: This test file requires hard to package python-anywidgets.
- #~(list "--ignore=tests/test_jupyter_chart.py"
- "-k" (string-join
- (list
- ;; these tests open an external connection.
- "not test_from_and_to_json_roundtrip"
- "test_render_examples_to_chart"
- ;; introduces a circular dependency on altair-viewer.
- "not test_save_html"
- ;; these tests require the vl-convert vega compiler
- "test_vegalite_compiler"
- "test_to_dict_with_format_vega"
- "test_to_json_with_format_vega"
- "test_to_url"
- "test_renderer_with_none_embed_options"
- "test_jupyter_renderer_mimetype")
- " and not "))))
- (propagated-inputs (list python-jinja2
- python-jsonschema
- python-numpy
- python-pandas
- python-setuptools
- python-toolz
- python-typing-extensions))
- (native-inputs (list python-black
- python-hatchling
- python-ipython
- python-pytest
- python-vega-datasets))
- (home-page "https://altair-viz.github.io/")
- (synopsis "Declarative statistical visualization library for Python")
- (description
- "Vega-Altair is a declarative statistical visualization library for Python.")
- (license license:expat)))
-
(define-public python-emcee
(package
(name "python-emcee")
@@ 1142,57 1193,6 @@ is widely used in many areas of astrophysical research.")
algorithms for evaluating Bayesian evidence.")
(license license:expat)))
-(define-public python-arviz
- (package
- (name "python-arviz")
- (version "0.21.0")
- (source (origin
- (method git-fetch) ; PyPI misses some test files
- (uri (git-reference
- (url "https://github.com/arviz-devs/arviz")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "02bqpl61gzn65vhwspi6gx9ln2wlwh8xm418i8vhmls44rvszcxf"))))
- (build-system pyproject-build-system)
- (arguments
- ;; FIXME: matplotlib tests fail because of the "--save" test flag.
- (list #:test-flags #~'("--ignore"
- "arviz/tests/base_tests/test_plots_matplotlib.py")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'remove-radon
- (lambda _
- (delete-file
- ;; This dataset is loaded remotely, it's not supposed to
- ;; be copied locally.
- "arviz/data/example_data/code/radon/radon.json")))
- (add-before 'check 'write-permission
- (lambda _
- ;; 3 tests require write permission.
- (setenv "HOME" "/tmp"))))))
- (native-inputs (list python-cloudpickle python-pytest))
- (propagated-inputs (list python-dm-tree
- python-h5netcdf
- python-matplotlib
- python-numpy
- python-packaging
- python-pandas
- python-scipy
- python-typing-extensions
- python-xarray
- python-xarray-einstats
- python-setuptools
- python-wheel))
- (home-page "https://github.com/arviz-devs/arviz")
- (synopsis "Exploratory analysis of Bayesian models")
- (description
- "ArviZ is a Python package for exploratory analysis of Bayesian models.
-It includes functions for posterior analysis, data storage, model checking,
-comparison and diagnostics.")
- (license license:asl2.0)))
-
(define-public python-pymc
(package
(name "python-pymc")