From eb04b8ca591db81586b779a20932f7e45fdd44c0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 29 Nov 2024 21:56:24 +0100 Subject: [PATCH] gnu: r-affyplm: Add missing inputs and disable tests. * gnu/packages/bioconductor.scm (r-affyplm)[native-inputs]: Add r-affydata and r-hgu95av2cdf. [arguments]: Disable tests. [properties]: Tell updater to keep extra input. Change-Id: I05778ba527078d46e955a752a2b1af075508fdf0 --- gnu/packages/bioconductor.scm | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 83590d26b39459117ec498268e12b100fd77bfe9..40d3b2853e9dc69ad942552302c619ef83a496a4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3822,8 +3822,12 @@ limma packages.") (uri (bioconductor-uri "affyPLM" version)) (sha256 (base32 "182zym9g8rzyrmj78yzpdh44av616x6228xzxwa45wz2spg9bj47")))) - (properties `((upstream-name . "affyPLM"))) + (properties + `((upstream-name . "affyPLM") + (updater-extra-native-inputs . ("r-hgu95av2cdf")))) (build-system r-build-system) + ;; Tests fail with: return code from pthread_create() is 22 + (arguments (list #:tests? #false)) (inputs (list zlib)) (propagated-inputs (list r-affy @@ -3832,6 +3836,7 @@ limma packages.") r-gcrma r-preprocesscore r-zlibbioc)) + (native-inputs (list r-affydata r-hgu95av2cdf)) (home-page "https://github.com/bmbolstad/affyPLM") (synopsis "Methods for fitting probe-level models") (description