~ruther/guix-local

def1f7ba661c5896b0e90b0f6d3a6d996306cac8 — Ricardo Wurmus 1 year, 1 month ago 8411901
gnu: Move python-pysnptools to (gnu packages bioinformatics).

* gnu/packages/python-xyz.scm (python-pysnptools): Move from here...
* gnu/packages/bioinformatics.scm (python-pysnptools): ...to here.

Change-Id: I4dbd9cbe3f2d9a6dd4906be79b78862b39a57c28
2 files changed, 42 insertions(+), 42 deletions(-)

M gnu/packages/bioinformatics.scm
M gnu/packages/python-xyz.scm
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +42 -0
@@ 3406,6 3406,48 @@ annotation, provides Python genomic feature search and sequence retrieval from
the managed genomes, STAR indexing and mapping and more.")
      (license license:gpl3+))))

(define-public python-pysnptools
  (package
    (name "python-pysnptools")
    (version "0.5.14")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "pysnptools" version))
       (sha256
        (base32
         "1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk"))))
    (build-system pyproject-build-system)
    ;; Tests require test data from python-bed-reader, which fetches data with
    ;; python-pooch.
    (arguments (list #:tests? #f))
    (propagated-inputs
     (list python-bed-reader
           python-cloudpickle
           python-h5py
           python-more-itertools
           python-numpy
           python-pandas
           python-psutil
           python-scipy))
    (native-inputs
     (list python-pytest
           python-pytest-cov
           python-pytest-datadir
           python-pytest-doctestplus
           python-setuptools
           python-sphinx
           python-sphinx-rtd-theme
           python-wheel))
    (home-page "http://microsoftgenomics.github.io/PySnpTools/")
    (synopsis "Library for reading and manipulating genetic data")
    (description
     "PySnpTools is a library for reading and manipulating genetic data.  It
can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of
those files.  It can also efficiently manipulate ranges of integers using set
operators such as union, intersection, and difference.")
    (license license:asl2.0)))

(define-public python-ega-download-client
  (package
    (name "python-ega-download-client")

M gnu/packages/python-xyz.scm => gnu/packages/python-xyz.scm +0 -42
@@ 10521,48 10521,6 @@ snippets with input parameters (e.g., the size of an array) and plotting
the results.")
    (license license:gpl3+)))

(define-public python-pysnptools
  (package
    (name "python-pysnptools")
    (version "0.5.14")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "pysnptools" version))
       (sha256
        (base32
         "1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk"))))
    (build-system pyproject-build-system)
    ;; Tests require test data from python-bed-reader, which fetches data with
    ;; python-pooch.
    (arguments (list #:tests? #f))
    (propagated-inputs
     (list python-bed-reader
           python-cloudpickle
           python-h5py
           python-more-itertools
           python-numpy
           python-pandas
           python-psutil
           python-scipy))
    (native-inputs
     (list python-pytest
           python-pytest-cov
           python-pytest-datadir
           python-pytest-doctestplus
           python-setuptools
           python-sphinx
           python-sphinx-rtd-theme
           python-wheel))
    (home-page "http://microsoftgenomics.github.io/PySnpTools/")
    (synopsis "Library for reading and manipulating genetic data")
    (description
     "PySnpTools is a library for reading and manipulating genetic data.  It
can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of
those files.  It can also efficiently manipulate ranges of integers using set
operators such as union, intersection, and difference.")
    (license license:asl2.0)))

(define-public python-pykdtree
  (package
    (name "python-pykdtree")