~ruther/guix-local

84119015a33d7f4e7c9ca5c9a187b99a1ee41c54 — Ricardo Wurmus 1 year, 1 month ago 69e8a3f 
gnu: python-pysnptools: Update to 0.5.14.

* gnu/packages/python-xyz.scm (python-pysnptools): Update to 0.5.14.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[propagated-inputs]: Remove python-dill; add python-bed-reader,
python-cloudpickle, and python-more-itertools.
[native-inputs]: Remove python-cython; add python-pytest, python-pytest-cov,
python-pytest-datadir, python-pytest-doctestplus, python-setuptools,
python-sphinx, python-sphinx-rtd-theme, and python-wheel.

Change-Id: I685f819e70ab209198b504c6e41b253dc5a1d876
patch browse .tar.gz 
1 files changed, 17 insertions(+), 16 deletions(-)

M gnu/packages/python-xyz.scm

M gnu/packages/python-xyz.scm => gnu/packages/python-xyz.scm +17 -16
@@ 10524,35 10524,36 @@ the results.")
(define-public python-pysnptools
  (package
    (name "python-pysnptools")
    (version "0.4.11")
    (version "0.5.14")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "pysnptools" version))
       (sha256
        (base32
         "0gxr0bjix307wvk0qh7vkafbxbzfpdmq0wlswpxyyaymy0fwcypv"))))
    (build-system python-build-system)
    (arguments
     `(#:tests? #f ; no test data are included
       #:phases
       (modify-phases %standard-phases
         (replace 'check
           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
             (if tests?
                 (begin
                   (add-installed-pythonpath inputs outputs)
                   (invoke "python3" "pysnptools/test.py"))
                 #t))))))
         "1babnyky5fk93as1ybdvpz9x3x5099gkgscxflngzfswin23mspk"))))
    (build-system pyproject-build-system)
    ;; Tests require test data from python-bed-reader, which fetches data with
    ;; python-pooch.
    (arguments (list #:tests? #f))
    (propagated-inputs
     (list python-dill
     (list python-bed-reader
           python-cloudpickle
           python-h5py
           python-more-itertools
           python-numpy
           python-pandas
           python-psutil
           python-scipy))
    (native-inputs
     (list python-cython))
     (list python-pytest
           python-pytest-cov
           python-pytest-datadir
           python-pytest-doctestplus
           python-setuptools
           python-sphinx
           python-sphinx-rtd-theme
           python-wheel))
    (home-page "http://microsoftgenomics.github.io/PySnpTools/")
    (synopsis "Library for reading and manipulating genetic data")
    (description