~ruther/guix-local

ad2e5277fe323c40f70c60f89a88a551bb784957 — Ricardo Wurmus 4 months ago 36c8e38 
gnu: r-msnbase: Restore tests that failed because of libxml2.

* gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Restore two tests; fix
them by adding 'ensure-libxml2-works phase.

Change-Id: I555f19d5bc749cdd458af4b55a2a5a2e89c7d190
patch browse .tar.gz 
1 files changed, 0 insertions(+), 9 deletions(-)

M gnu/packages/bioconductor.scm

M gnu/packages/bioconductor.scm => gnu/packages/bioconductor.scm +0 -9
@@ 11666,15 11666,6 @@ containers.")
                (string-append "XML::libxmlFeatures()\n" m)))))
         (add-after 'unpack 'delete-bad-tests
           (lambda _
             ;; These tests fail since the upgrade to libxml2 2.14, which
             ;; removed transparent decompression.
             (with-directory-excursion "tests/testthat/"
               (substitute* "test_centroided.R"
                 ((".*isCentroidedFromFile.*" m)
                  (string-append m "skip('guix')\n")))
               (substitute* "test_MSnExp.R"
                 ((".*isolation window.*" m)
                  (string-append m "skip('guix')\n"))))
             ;; Needs r-prolocdata
             (for-each delete-file
                       '("tests/testthat/test_average.R"